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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgcttatagtatgtgtatctctgcctcgcacataatgtgcttctgctcattacttggttgttttcatgaaacagGCAGGCAAAAAACTTGTACTTATTACCAACTCAGATTATCATTATACACACAAAATGATGCATCATTCATTCAATAGATTCCTTCCCAATGACATGGGTT

Basic information

species Glycine max
transcript GLYMA15G21240.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G21240.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g14810.2 (Oryza sativa), 3'ss of exon 9
---------gtattgc-ttata-gtatgtgtatctctg----cctcgcacataatgtgcttctgctcattacttggttgttttc--------atgaaacagGCAGGCAAAAAACTTGTACTTATTACCAACTCAGATTATCATTATACACACAAAATGATGCATCATTCATTCAATAGATTCCTTCCCAATGACATGGGTT
           ||| | ||| | ||   ||   |  |       |   |  |  ||| |||||   |||||||| | || ||||        |   | ||||| || ||||   |  | |||||||| ||||||||||| || |||||  ||||||||||| ||||| |||||||| | |||||||| ||||| ||||  |
gttaacacacaattaccttacaagttcatgatccattaataatattagaacttttgtacttctctgcattactttgctgatttcccctttcaactcatcagGCTGGAAAAAGGTTGCTTCTTATTACAAACTCAGATTACCACTATACGAACAAAATGATGAATCATGCATTCAATCGCTTCCTTCCTAATGATATGGCAT

upper sequence: GLYMA15G21240.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G044819_T02 (Zea mays), 3'ss of exon 8
------------------gtattgcttatagtatgtgtatctctgcctcgcacataatgtgcttctgctcattacttggttgtt--ttcatgaaac----agGCAGGCAAAAAACTTGTACTTATTACCAACTCAGATTATCATTATACACACAAAATGATGCATCATTCATTCAATAGATTCCTTCCCAATGACATGGGTT
                    |||  |  |  | | || |||  | |   | | |||      || |||| ||    ||| | ||  | ||  ||||    |||| || |||||  |  | || ||||| || |||||||  ||||||||| ||||||||||| ||||| |||||||| | || ||||| |||||  |||| |
gtgttctcttaatcttctacatttatggtgctgtatg-atcaattcagtgta-atagaaccattgtgctgatatgctggcttttcctccaacaaactatcagGCTGGAAAAAAGTTGCTTCTCATTACTAATTCAGATTTCCATTATACAAACAAAATGATGAATCATGCATTCAATCGCTTTCTTCCTAATGATGTGGGAT

upper sequence: GLYMA15G21240.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G48960.1 (Arabidopsis thaliana), 3'ss of exon 9
gtattgcttatagtatgtgtatc-tctgcctcgcacataatgtgcttctgctcattacttggttgttttcatgaaacagGCAGGCAAAAAACTTGTACTTATTACCAACTCAGATTATCATTATACACACAAAATGATGCATCATTCATTCAATAGATTCCTTCCCAATGACATGGGTT
||| || ||  ||| | |  |   | |  ||  |  || ||| | ||| | |  | |  | ||  | ||| |  |  |||| || || || ||  | ||||| || ||||| |||||||| || ||| ||||||||||| | |||||||| || | ||||||||||||||||||||  |
gtaatggtt-cagtctttacacaatatatctaac-tatgatg-gtttcagttgttaatattgtcatgttcgttca-tagGCTGGTAAGAAGCTCTTGCTTATCACAAACTCGGATTATCACTACACAGACAAAATGATGAAGCATTCATTTAACAAATTCCTTCCCAATGACATGGACT

upper sequence: GLYMA15G21240.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g00880.t01 (Vitis vinifera), 3'ss of exon 9
gtattgcttatagtatgtgta-tctctgcctcgcacataat-gtgct----tctgctcatt-acttggttgttttcatgaaacagGCAGGCAAAAAACTTGTACTTATTACCAACTCAGATTATCATTATACACACAAAATGATGCATCATTCATTCAATAGATTCCTTCCCAATGACATGGGTT
|||| |||||||     | || ||| ||   |      ||| ||  |    ||| || ||| |||||| | || |  |  | ||||| |||||||| ||| | |||||||||||||||||||||||||||||| ||||||||||||| ||||| || || | ||||||||| ||||| ||||| |
gtat-gcttataactcttctagtctttgtgacaggtgaaattgttgtaagatctccttattcacttggatattcttttctatcagGCTGGCAAAAAGCTTTTGCTTATTACCAACTCAGATTATCATTATACAGACAAAATGATGCAGCATTCCTTTAACAAATTCCTTCCAAATGATATGGGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcctcgcacataatgtgcttctgctcattacttggttgttttcatgaaacagGCAGGCAAAAAACTTGTACTTATTACCAACTCAGATTATCATTATACACACAAAATGATGCATCATTCATTCAATAGATTCCTTCCCAATGACATGGGTT
                                      ttgttttc  CT-rich tract
          acataat  TA-rich tract