1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atgcttgaaacggattccatttttcatgtctaagtatcaagatatttctaagtaggtaacaagaaatatatatactccttttctaactctagttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGAAGAGATGCTGATTCAGACTACATATAGGATCTGTTTGGATACAAGCAC
species | Glycine max |
transcript | GLYMA15G17840.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGEST: gi|31465370|gb|CD407398.1|CD407398
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: GGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTGGCAAG GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: GGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
ttctaagtaggtaacaagaaatatatatactccttttctaactctagttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGAAGAGATGCTGATTCAGACTACATATAGGATCTGTTTGGATACAAGCAC
ttctaac putative branch site (score: 1)
taacaagaaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttgaaacggattccatttttcatgtctaagtatcaagatatttctaagtaggtaacaagaaatatatatactccttttctaactctagttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGAAGAGATGCTGATTCAGACTACATATAGGATCTGTTTGGATACAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT