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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcttgaaacggattccatttttcatgtctaagtatcaagatatttctaagtaggtaacaagaaatatatatactccttttctaactctagttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGAAGAGATGCTGATTCAGACTACATATAGGATCTGTTTGGATACAAGCAC

Basic information

species Glycine max
transcript GLYMA15G17840.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23728829|gb|BU762478.1|BU762478
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|57574625|gb|CX547600.1|CX547600
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|31465370|gb|CD407398.1|CD407398
EST:     GGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTGGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: GGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|15204141|gb|BI426909.1|BI426909
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|31308353|gb|CD393556.1|CD393556
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|15813617|gb|BI785892.1|BI785892
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
EST: gi|31310074|gb|CD395277.1|CD395277
EST:     CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAG                         GAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG
genomic: CCCTATGGACCTCCTGGTGTTCCTGGTTTTGAACCCAACAAATTTGCAAGgtatggttca ... agttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctaagtaggtaacaagaaatatatatactccttttctaactctagttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGAAGAGATGCTGATTCAGACTACATATAGGATCTGTTTGGATACAAGCAC
                                   ttctaac  putative branch site (score: 1)
           taacaagaaatatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgcttgaaacggattccatttttcatgtctaagtatcaagatatttctaagtaggtaacaagaaatatatatactccttttctaactctagttttgcagGAATCCTAGGAGGCCAGGATACGACGCTCATCCAGATTTGCAACATTTCCGAAGAGATGCTGATTCAGACTACATATAGGATCTGTTTGGATACAAGCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-tgcttga
- - - - - - - - - - - -tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaata