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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcctttctaactgaagtgtctttaggataaaatgttttcctcaaacgaagtgattggatatttttctttacatgttcctgcagATTGATGTTGTAACGCAGCGTGGTTTTGTTCCTGTCGATGAGCGCATGAGAGTACTTGATGCAAATGGAAACCTG

Basic information

species Glycine max
transcript GLYMA15G15310.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G15310.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 3'ss of exon 8
gtatgc-ctttctaactgaagtgtctttaggataaaatgttttcctcaaacgaagtgattggatatt---tttctttacatgttcctgcagATTGATGTTGTAACGCAGCGTGGTTTTGTTCCTGTCGATGAGCGCATGAGAGTACTTGATGCAAATGGAAACCTG
||| |  | |      ||||     ||   |  | ||  ||| |  ||    |  |    | ||| |   |         | || || |||||  ||||||| || |||||||||||| ||||||| |||||||| ||| ||||  | |||||| |||| ||  ||
gtaagtacctgaaggttgaaactgtttgctgtcagaacatttcctacagttaagtttcaagcatagtgaatcggaccctttttttcttcagATCAATGTTGTTACACAGCGTGGTTTTATTCCTGTTGATGAGCGAATGCGAGTCATGGATGCAGATGGCAATGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27426345|gb|CA937865.1|CA937865
EST:     TAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAAT                         ATTGATGTTGTAACGCAGCGTGGTTTTGTTCCTGTCGATGAGCGCATG
genomic: TAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAATgtatgccttt ... gttcctgcagATTGATGTTGTAACGCAGCGTGGTTTTGTTCCTGTCGATGAGCGCATG
EST: gi|23063995|gb|BU578768.1|BU578768
EST:     TAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAAT                         ATTGATGTTGTAACGCAGCGTGGTTTTGTTCCTGTCGATGAGCGCATGAGA
genomic: TAATAGCAACAGGAAGGGCTCCATTCACACAAGGTCTTGGATTGGAGAATgtatgccttt ... gttcctgcagATTGATGTTGTAACGCAGCGTGGTTTTGTTCCTGTCGATGAGCGCATGAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgttttcctcaaacgaagtgattggatatttttctttacatgttcctgcagATTGATGTTGTAACGCAGCGTGGTTTTGTTCCTGTCGATGAGCGCATGAGAGTACTTGATGCAAATGGAAACCTG
                                            tgttcct  CT-rich tract
                             atatttttctttacat  TA-rich tract