1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttccctattctctctgtgtgtgtctgtacatgggaaagaagataactgatttttggtttgagaatatgacacttcatcttatcaattgtctgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATG
species | Glycine max |
transcript | GLYMA15G13700.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTG AAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGGAGCAEST: gi|192304076|gb|FG995320.1|FG995320
genomic: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTGgtatgatcaa ... tgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCA
EST: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTG AAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAEST: gi|19270806|gb|BM887062.1|BM887062
genomic: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTGgtatgatcaa ... tgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCA
EST: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTG AAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAEST: gi|192331297|gb|FK021008.1|FK021008
genomic: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTGgtatgatcaa ... tgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCA
EST: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTG AAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAEST: gi|214006194|gb|DB988321.1|DB988321
genomic: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTGgtatgatcaa ... tgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCA
EST: GACAGATGAAATTG AAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAEST: gi|7030359|gb|AW460142.1|AW460142
genomic: GACAGATGAAATTGgtatgatcaa ... tgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCA
EST: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTG AAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCA
genomic: ATGAGGAATACATGCTGTCTGTTCCCGAGCATTATGGACAGATGAAATTGgtatgatcaa ... tgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCA
ctgatttttggtttgagaatatgacacttcatcttatcaattgtctgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATG
ttatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttccctattctctctgtgtgtgtctgtacatgggaaagaagataactgatttttggtttgagaatatgacacttcatcttatcaattgtctgtgctgcagAAAGTATTTGATCATGACACATTTTCTGCTGATGATATAATGGGAGAAGCAGACATTGATCTTCAGTCTCTGATAACATCTGCTATGGCATTTGGAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - -gtgtgtg
- - - - - - - - - - - tctgtac
- - - - - - - - - - - - - - - - ggaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -tggtttg