1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgcattgtggatgcctgctgctagtgttggaaaatgtgattcaatgtctattggtaaatgtcaaatgataatatgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
species | Glycine max |
transcript | GLYMA15G12980.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAGAGATTTCAGCTTTCTAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACEST: gi|193462959|gb|FK427724.1|FK427724
genomic: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtactt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTAC
EST: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACEST: gi|17024037|gb|BM095071.1|BM095071
genomic: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtactt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTAC
EST: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACEST: gi|58016977|gb|CX703719.1|CX703719
genomic: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtactt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTAC
EST: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCNTGATGGGAAACTAGTTGTTATTGTTGGAGACTACEST: gi|58016661|gb|CX703403.1|CX703403
genomic: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtactt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTAC
EST: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAAT CATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTAC
genomic: TGGAGAGATTTCAGCTTTCGAAGCATTTCTGCTTTCCTTGGCCAGTAAATgtaagtactt ... ctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTAC
tgtctattggtaaatgtcaaatgataatatgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
tttgttctctttctgt CT-rich tract
aaatgataatatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcattgtggatgcctgctgctagtgttggaaaatgtgattcaatgtctattggtaaatgtcaaatgataatatgaatttgttctctttctgtctgcagCATACTTCATTGAGCCCTGATGGGAAACTAGTTGTTATTGTTGGAGACTACCCAGAAGGGTTACTGGTGGATTCTCAAACAGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
-tgcattg
- - - - -ggatgcc
- - - - - - - - tgctgct
- - - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - - - caatgtc