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...tgaacactaatgttcaaattgagcttctgagagaaaattaagaaattgggtatgtgtttaaagttgaatttaatgggttggtgttgatttctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
species | Glycine max |
transcript | GLYMA15G12220.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|31463880|gb|CD405908.1|CD405908
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|21994680|gb|BQ786208.1|BQ786208
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|22932404|gb|BU549543.1|BU549543
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|23734444|gb|BU765448.1|BU765448
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|31474015|gb|CD416043.1|CD416043
genomic: GACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|13312864|gb|BG406515.1|BG406515
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|22928039|gb|BU545178.1|BU545178
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCNNNGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|9901558|gb|BE610526.1|BE610526
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|254318122|gb|GR832290.1|GR832290
genomic: GTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|6724491|gb|AW308890.1|AW308890
genomic: GAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|26045902|gb|CA783326.1|CA783326
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: ATATGTGAGCTCAAGAGANCA-CTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCCTGTTTTCAAGCTAEST: gi|33389396|gb|CA852603.1|CA852603
genomic: ATATGTGAGCTCAAGAGA-CAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGCTA
EST: ACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGEST: gi|151403296|gb|EV273106.1|EV273106
genomic: ACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
EST: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGA GAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGCTATTT
genomic: GATATGTGAGCTCAAGAGACAACTTGAGGATTTTAATGAATCTTCTTAGAgtatgtctta ... ctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAGCTATTT
ttgggtatgtgtttaaagttgaatttaatgggttggtgttgatttctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
tgttgat putative branch site (score: 4)
tttctttctgc CT-rich tract
tttaaagttgaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaacactaatgttcaaattgagcttctgagagaaaattaagaaattgggtatgtgtttaaagttgaatttaatgggttggtgttgatttctttctgcagGAGTCAAGCAAGAGCATACAGATTGAAGCATTTCATGTTTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC