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gttcttcacttcctcatatatttgttcaatttatctagtgtttgtacatactaggggtagatgaaaaaaataaaaaatgcttccatgttaatctcatgattaaagtttgcttttatcaaaatttgatttaaacccataatacacttttcagGTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGATGTTGTTTGTAAAAGAGCTGAAATTAATTACAATTATGGTGTTATTCTTA
species | Glycine max |
transcript | GLYMA15G11890.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGGAATGTGCCTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAG GTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGATEST: gi|17021166|gb|BM092200.1|BM092200
genomic: TGGAATGTGCCTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAGgttcttcact ... cacttttcagGTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGAT
EST: CTATTATTGGAGAAGAG GTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGATEST: gi|12773861|gb|BG238788.1|BG238788
genomic: CTATTATTGGAGAAGAGgttcttcact ... cacttttcagGTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGAT
EST: TGGAATGTGCCTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAG GTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGAT
genomic: TGGAATGTGCCTTACAAACTCATCCAAACATTACTATTATTGGAGAAGAGgttcttcact ... cacttttcagGTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGAT
tgattaaagtttgcttttatcaaaatttgatttaaacccataatacacttttcagGTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGATGTTGTTTGTAAAAGAGCTGAAATTAATTACAATTATGGTGTTATTCTTA
atttgat putative branch site (score: 5)
cacttttc putative PPT
tttgcttttatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcttcacttcctcatatatttgttcaatttatctagtgtttgtacatactaggggtagatgaaaaaaataaaaaatgcttccatgttaatctcatgattaaagtttgcttttatcaaaatttgatttaaacccataatacacttttcagGTTGCTGCAAAAAAGCTGACGTTGAAAAATGTCACAGACTATATCGTAGATGTTGTTTGTAAAAGAGCTGAAATTAATTACAATTATGGTGTTATTCTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA