Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcacttttaattcattcttgtcatatatatcttggttgatgggattctcgcctatggtcaggtgatctggtcatctttcagaatgagttttattatggttttcacttgatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG

Basic information

species Glycine max
transcript GLYMA15G11670.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G11670.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0116g01210.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------------------------------------------gtaagtg-tcacttttaattcattcttgtcatatatatcttggttgatgggattctcgcctatggt---caggtgat--ctggtcatctttcagaatgagttttattatggttttca---cttg-atcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG
                                                                |   || |||    |  | ||   |     |  ||| || ||  | ||  | |  ||   || ||   |||   ||  ||  |   |||  | ||| |  |  | ||    |||      ||| ||  |  |||||   ||| | ||||| ||||| |||||||| ||||| |||||||||||||||| ||||||| |
gtgaacactatctttttattatcttttatctagtttaatttctcaatctccagattacttcacatggctgctcaaacatgttccacattacgttttcataactggggaggtgttactggcgttaattgtttccagaatatgtctaatgtacttctataattaactg-actacatcttttggattttgtattttacagGCATCACCACAGAAGATTTGCTCGCAAATTGGGTTGTGCACCTTTGATGGGACTCGTGGTGTTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589530|gb|AW705302.1|AW705302
EST:     CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAA                         GCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG
genomic: CCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAgtaagtgtca ... gatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctggtcatctttcagaatgagttttattatggttttcacttgatcctgtagGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAG
                                         acttgat  putative branch site (score: 5)
                   aatgagttttattat  TA-rich tract