1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatcccaattttctgttactatttttttgaattgttcctttcttctttgtccattgttcttttatcttgtcaaattccaatatagaaaaatccctttatctgctttggaattgccaactctgctgatttgttgctgtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCAGATGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAAACAACCCATA
species | Glycine max |
transcript | GLYMA15G10940.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGATTGCEST: gi|193556186|gb|FK511451.1|FK511451
genomic: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: GGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCEST: gi|207816288|gb|GD789229.1|GD789229
genomic: GGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: GGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCEST: gi|208154656|gb|GD958075.1|GD958075
genomic: GGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: GGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACTGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCEST: gi|193721194|gb|FK660352.1|FK660352
genomic: GGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: AAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCEST: gi|193511261|gb|FK468474.1|FK468474
genomic: AAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: CTCCGCCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCEST: gi|208273209|gb|GE070103.1|GE070103
genomic: CTCCG-CCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: AAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCEST: gi|193720858|gb|FK659022.1|FK659022
genomic: AAAGGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCEST: gi|207797416|gb|GD771214.1|GD771214
genomic: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: GGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCEST: gi|193348349|gb|FK309557.1|FK309557
genomic: GGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: AAGGGGGAACGTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGACCACTCGATGCAGAACACATCTGAGGTTGCEST: gi|193497429|gb|FK458281.1|FK458281
genomic: AAGGGGGAAC-TGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
EST: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAG ACCTTGTGTGTTGTATTCAGATCACTCAATGCAGAACACATCTGAGGTTGC
genomic: GGGGGAACTGTTGCTCCGCCTGAGAGGCAACATGCATCATTACCGAGgtatcccaat ... gtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGC
tccctttatctgctttggaattgccaactctgctgatttgttgctgtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCAGATGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAAACAACCCATA
tgctgat putative branch site (score: 3)
atttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcccaattttctgttactatttttttgaattgttcctttcttctttgtccattgttcttttatcttgtcaaattccaatatagaaaaatccctttatctgctttggaattgccaactctgctgatttgttgctgtgcatgcagACCTTGTGTGTTGTATTCAGACCACTCAATGCAGAACACATCTGAGGTTGCAGATGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAAACAACCCATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT