Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagggtttttctttctcatttaacttcagaaataattaatcgattcttcacataagttttagtaatattaaaagttttctttcattaatacagTTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAG

Basic information

species Glycine max
transcript GLYMA15G10030.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G10030.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv10s0003g03710.t01 (Vitis vinifera), 3'ss of exon 8
gttagggtttttctttctcatttaacttcagaaataattaatcgattcttcacataagttttagtaatattaaaagttttctttcattaatacagTTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAG
|| | || |    | | |      | | |     |||||      || || | ||    | |     || ||  |  |||   |||| | ||||||||||||| || ||||| || ||||| || |||||||| ||||| |||||||||
gtgaaggatagattgtttgtagctattccttg--taatt------ttttttatatgttgtctgtccttactagcaagttttcctcataattacagTTGAAGACTGAATGCGGAAGTCAGTTTACTAACAAACTTGAAGGAATGTTTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395410|gb|EV265287.1|EV265287
EST:     TGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAG                         TTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTT
genomic: TGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgttagggttt ... attaatacagTTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTT
EST: gi|151404598|gb|EV274412.1|EV274412
EST:     TGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAG                         TTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTT
genomic: TGTTAGGAAAGAGTGCTTCTATTGATGCAGAGAAATCTATGATCTCCAAGgttagggttt ... attaatacagTTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcgattcttcacataagttttagtaatattaaaagttttctttcattaatacagTTGAAGACCGAGTGCGGCAGCCAGTTCACAAACAAACTAGAAGGGATGTTTAAG
                                            cattaat  putative branch site (score: 3)
                                    ttttctttcatt  CT-rich tract
             ataagttttagtaata  TA-rich tract