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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaattcttactaccaaaatactttttagatatataaatgaataatatgtatatcctgcaactgcatcaatccatagaactagaattttttacttgtgatttattattatgtagGAATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGCTGACTATCCCTAATTTCAG

Basic information

species Glycine max
transcript GLYMA15G07520.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G07520.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0445g00010.t01 (Vitis vinifera), 3'ss of exon 8
------------------------gtacaattcttact---accaaaatactttttagatatataaatgaataatatgtatatcctgcaactgcatcaatccatagaactagaatttttta------cttgtgatttattattatgtagGAATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGCTGACTATCCCTAATTTCAG
                         | ||||  | | |   |   | ||  | ||   | || | | ||     ||| |  |   | |   |  |||||  | |    ||    || ||        ||| | |||  || ||||||||||| |||||||||||| | ||||||||||| || ||  | || ||||||| ||| || ||||||||
gtaaccctcttgcctgttctgtgccttcaatcttcaattgaattcatattttcttagaaaattttactgctggttattttcaaattactgtttgatcaaaacttcttgcttactttcttcctcacaccttattattccttgttatgtagGAACATAGAGAACAATCTGTTCTCTGGGCCTATACCAGCGAAGTTGCTGAGTATTCCAAATTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactgcatcaatccatagaactagaattttttacttgtgatttattattatgtagGAATATAGAGAACAATTTATTCTCTGGGCCAATTCCTCCAAAATTGCTGACTATCCCTAATTTCAG
                     tagaattttttacttg  TA-rich tract