Sequence
atgc intronic sequence ATGC exonic sequencegtgagcctatgttatgtccatcatactttataaatggcatcaaagtttcacactacaccaaatcatttctgtactccgtactcaaatgttctcatttttctttccctgtttattagGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGCAAGGGGAAAATCCTACTCTTTACATCATCCAATACATATCAAGCTTATTTAA
Basic information
species | Glycine max |
transcript | GLYMA15G03770.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os06g41020.1 (Oryza sativa), 3'ss of exon 8
gtgagcctat-gttatgtccatcatactttataaatgg-catcaaagtttcacactacaccaaatcatttctgtactccgtactcaaatgttctcatttttctttccctgtttattagGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGCAAGGGGAAAATCCTACTCTTTACATCATCCAATACATATCAAGCTTATTTAA
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gtaagtgaacagttagtttca--gaagttcagaactgaacagtataatgtta-agtgctctgaaaaa-----acaagtaggattgtaatgttatctactgtctggttttattt-tcagGGATAGAATCATTCTCCAAGCTGGGGGATTCTATCTACTTTGAGCAGAAAGGAGACAAGCCAGGGCTCTACATTATTCAGTACATACCGAGCACATTTAA
upper sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G12950.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgagcctatgttatgtccatcatactttataaatggcatcaaagtttcacactacaccaaatcatttctgtactccgtactcaaatgttctcatttttctttccctgtttattagGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGCAAGGGGAAAATCCTACTCTTTACATCATCCAATACATATCAAGCTTATTTAA
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--------gtaaactcttaaccacaattcatctggttttctacatttttgtaagatacaaaa--------gtaagataaattttgagggtc---tttttttgtttctgtccac-agGAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTCCAGCTCTTTATGTCACCCAATATATATCAAGCTCACTTGA
upper sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G12960.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgagcctatg-ttatgtccatcatactttataaatggcatcaaagtttcacactacaccaaatcatttctgtactccgtactcaaatgttctcatttttctttccctgtttattagGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGCAAGGGGAAAATCCTACTCTTTACATCATCCAATACATATCAAGCTTATTTAA
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gtaaacttttaaccacaatcatctggttttctacatttt-------tcttgtttcaagacagattaattttgaggt---------aatggtagtaattgaatctttctgtccac-agGAATTGAATCCTTCTCAAAACTGGGAGATTCCATATATTTTCAAGAAGATGGTGCAACTCCAGCTCTTTATGTCACCCAATATATATCAAGCTCACTTGA
upper sequence: GLYMA15G03770.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv06s0004g01770.t01 (Vitis vinifera), 3'ss of exon 8
------------------------------------------------------------gtgagcctatgttatgtc------catcatactttataaatggcatcaaagtt---tcacactacaccaaatcatttctgtactccgtact-caaatgttctcatttttctttccctgtttattagGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGCAAGGGGAAAATCCTACTCTTTACATCATCCAATACATATCAAGCTTATTTAA
||| ||| | | || | | ||| | | | ||| ||| ||| | | | | || |||||| | | || | || || | ||| | || | ||||||||||||||||||| ||| | |||||||| || || |||||||| | || ||| ||| ||||||||||||||||||||||||||| | || |
gtctggacttatatatatattatgttctcaaatatgaggatttgctttctcaatttccttttgattctaaatgaattcagacagcctgatattctctgcatgttatctctgttggcttatggtctctgatattatttcttttcagggtttcatacatcttatagtttcttcttgctacccctgtagGAATTGAATCATTCTCGAAGTTAGGAGATTCCATATACTTTGAAGAAGAGGGAAAAAGTCCCGAAGTTTACATCATCCAATACATATCAAGCTCACTTGA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcatttctgtactccgtactcaaatgttctcatttttctttccctgtttattagGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGCAAGGGGAAAATCCTACTCTTTACATCATCCAATACATATCAAGCTTATTTAA
tgttctcatttttctt CT-rich tract
atttttcttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagcctatgttatgtccatcatactttataaatggcatcaaagtttcacactacaccaaatcatttctgtactccgtactcaaatgttctcatttttctttccctgtttattagGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGCAAGGGGAAAATCCTACTCTTTACATCATCCAATACATATCAAGCTTATTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT