Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtcattttattttatattattaggctttgggattcaattatttgagctgttaaaggttttgtgcagGTGGAACAGAATATAAAAGGATGTTACAAGTTAATAAGCCTACAGCCAGTTGACATGTTCCCACACACACCTCATATTGAGTGCGTTTGCCTTCTGGAGC

Basic information

species Glycine max
transcript GLYMA15G02550.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G02550.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g02670.t01 (Vitis vinifera), 3'ss of exon 9
----gtatgtgtcattttattttatattattaggctttgggattcaattatttgagctgttaaaggttttgtgcagGTGGAACAGAATATAAAAGGATGTTACAAGTTAATAAGCCTACAGCCAGTTGACATGTTCCCACACACACCTCATATTGAGTGCGTTTGCCTTCTGGAGC
    |||| |||| | |   ||   | |  |   ||       |  ||  ||| ||| | | |    ||  || ||||||| || |||||  |||||||||||||  | | |||| ||||||| || ||||||||||| ||||| || ||||||||||| ||||||||  ||||||
gtatgtatctgtcttctctattggcagttcttatctccatagcttcatcgtttaagccggtgagaacttaatgtagGTGGAGCAAAATATTGAAGGATGTTACAAACTGAAAAGCTTACAGCCTGTGGACATGTTCCCGCACACTCCACATATTGAGTGTGTTTGCCTGTTGGAGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatattattaggctttgggattcaattatttgagctgttaaaggttttgtgcagGTGGAACAGAATATAAAAGGATGTTACAAGTTAATAAGCCTACAGCCAGTTGACATGTTCCCACACACACCTCATATTGAGTGCGTTTGCCTTCTGGAGC
                    attcaattatttga  TA-rich tract