1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaatgatgctttagttgtaaaattgtatatgtggaaattgctatacttttatgccatcgtactcgaaaggaaaaaaagaatttgagtttaaagtgtcacctatttaatgtcattctgtatttgatttagGTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCGGAGAATGGAATTG
species | Glycine max |
transcript | GLYMA15G02400.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCA GTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGAEST: gi|8283061|gb|BE020622.1|BE020622
genomic: TGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCAgtaatgatgc ... tttgatttagGTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGA
EST: TGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCA GTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGAEST: gi|151406712|gb|EV276527.1|EV276527
genomic: TGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCAgtaatgatgc ... tttgatttagGTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGA
EST: TGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCA GTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGA
genomic: TGAAAGTTGCAGTGGTCGGAATTCCAAAAACTATTGACAATGATATCCCAgtaatgatgc ... tttgatttagGTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGA
aaagaatttgagtttaaagtgtcacctatttaatgtcattctgtatttgatttagGTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCGGAGAATGGAATTG
tatttaatgtcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgatgctttagttgtaaaattgtatatgtggaaattgctatacttttatgccatcgtactcgaaaggaaaaaaagaatttgagtttaaagtgtcacctatttaatgtcattctgtatttgatttagGTTATTGACAAATCAATTGGTTTCGACACTGCTGTTGAAGAGGCACAACGAGCAATCAATTCTGCTCATGTGGAAGCAGAAAGCGCGGAGAATGGAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA