1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaattggttgctgccgtttctgtaagtcttttaattcatggttgccatttagctgaaattgttttccattttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAGCAACAGGACTCTCTTCCGAAATATGTCACCCCGGTACTTTTGTCAGCTG
species | Glycine max |
transcript | GLYMA15G01750.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAG GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACNGEST: gi|33388505|gb|CA851712.1|CA851712
genomic: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAG GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAGEST: gi|33390219|gb|CA853426.1|CA853426
genomic: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAG
EST: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAG GTCTTAAATGAATGTGTGGAAGCTGAGAACTGGEST: gi|193488401|gb|FK457540.1|FK457540
genomic: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGG
EST: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAG GTCTTAAATGAATGTGTG
genomic: TGTCAAATGATCCCAAATTCGATCACATTGACATCAATGAGAAACAAAAGgtaattggtt ... ttgtttgcagGTCTTAAATGAATGTGTG
gtcttttaattcatggttgccatttagctgaaattgttttccattttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAGCAACAGGACTCTCTTCCGAAATATGTCACCCCGGTACTTTTGTCAGCTG
ttttaat putative branch site (score: 3)
ttttccattttgttt putative PPT
aaattgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattggttgctgccgtttctgtaagtcttttaattcatggttgccatttagctgaaattgttttccattttgtttgcagGTCTTAAATGAATGTGTGGAAGCTGAGAACTGGCTCAGGGAGAAAAAACAGCAACAGGACTCTCTTCCGAAATATGTCACCCCGGTACTTTTGTCAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG