Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctattaccaaatccacaatcgtctctgaatcatgttgtctgagctgcaagttgttgatatttcaaaaattgtttttaaacaaattaattttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATATTGTTAATGTTTTCTCATTCTCAAAAGCATATGGAATGATGGGATGGCGG

Basic information

species Glycine max
transcript GLYMA15G01520.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G01520.2 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G029135_T01 (Zea mays), 3'ss of exon 7
cctattaccaaatccacaatcgtctctgaatcatgttgtctgagctgcaagttgttgatatttcaaaaattgtt--tttaaacaaattaattttgtct----gcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATATTGTTAATGTTTTCTCATTCTCAAAAGCATATGGAATGATGGGATGGCGG
     |   | ||     || | ||   |||   ||| |  |  || ||   | |     ||  ||   ||| |  ||    |   ||   | |||||    |||| || ||||||||||||||  |||| |||| |||  | || || | ||||||||| ||  | |||||||||||||| || |||||||||||||| ||||| 
----atggaatataattgatggactaaaaatttagttat--ggtcttcagtatttgagctttgtaaggcttgatgcttaggtcggttttcctgtgtctttttgcagATACTTTATGTATGATGGAATGAAGCACTATTGCTTAGAAGGCACTCATATTGTCAACCTCTTCTCATTCTCAAAGGCTTATGGAATGATGGGGTGGCGT

upper sequence: GLYMA15G01520.2 (Glycine max), 3'ss of exon 4
lower sequence: AT1G80360.1 (Arabidopsis thaliana), 3'ss of exon 7
cctattaccaaatccacaatcgtctctgaatcatgttgtctgagctgcaagttgttgatatttcaaaaattgtttttaaacaaattaattttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATATTGTTAATGTTTTCTCATTCTCAAAAGCATATGGAATGATGGGATGGCGG
                     ||   |   |||| ||   | |     | | |||  | |||    ||  |  |  ||| |       |       |||||||||| |||||||| ||  | ||||| | ||| ||||||||| | || ||||||||||| ||||| ||||| ||| | ||||| |||||||| ||| ||
---------------------gtgagtttctcat-ttccttaattcctatgatgtccaaatt---gaatgtagtaataagcggggatttgaaaatcgcagGTATTTCATGTATGACGGTTTAAAACATTGTTGCGTTGAGGGAGACCACATTGTTAATGTCTTCTCTTTCTCTAAAACCTATGGCATGATGGGTTGGAGG

upper sequence: GLYMA15G01520.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv09s0002g05250.t01 (Vitis vinifera), 3'ss of exon 7
cctattaccaaatccacaatcgtctctgaatcatgttgtctgagctgcaagttgttgatatttcaaaaattgtttttaaacaaattaattttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATATTGTTAATGTTTTCTCATTCTCAAAAGCATATGGAATGATGGGATGGCGG
   |    | |   || ||  || |  |  |  ||     ||   | | |       | | | |   | | | || |  |   |  | ||   | |||||||| |||||||||||||| || || ||| | ||||| |||||  |||| || || ||  |||| || ||||||||||| ||||| |||||||||||||| 
ttgagattctaggacaaaacagtgtaagtgttctgcccagtgttttcccatgaagcaacagtactctattggattatggaattaacatttggttttgcagGTACTTTATGTATGATGGTCTTAAGCACACATGTGTAGAGGGTGATCACATAGTGAACATTTTTTCCTTCTCAAAAGCCTATGGGATGATGGGATGGCGA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26058655|gb|CA801569.1|CA801569
EST:     GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA                         GTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
genomic: GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGAgtaagccttt ... ttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
EST: gi|254318659|gb|GR828603.1|GR828603
EST:     GGCTCTTGGCTTGTTGTTGATAATACATACGA                         GTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
genomic: GGCTCTTGGCTTGTTGTTGATAATACATACGAgtaagccttt ... ttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
EST: gi|4313781|gb|AI460900.1|AI460900
EST:     GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA                         GTATTTTATGTATGATG
genomic: GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGAgtaagccttt ... ttgtctgcagGTATTTTATGTATGATG
EST: gi|37995957|gb|CF807546.1|CF807546
EST:     GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA                         GTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
genomic: GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGAgtaagccttt ... ttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
EST: gi|151399034|gb|EV268905.1|EV268905
EST:     GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA                         GTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGGGGGAA-TCATAT
genomic: GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGAgtaagccttt ... ttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
EST: gi|13477614|gb|BG507424.1|BG507424
EST:     GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA                         GTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
genomic: GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGAgtaagccttt ... ttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
EST: gi|7233283|gb|AW568631.1|AW568631
EST:     GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGA                         GTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT
genomic: GATCTCTGCAAGAATGCTGGCTCTTGGCTTGTTGTTGATAATACATACGAgtaagccttt ... ttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcaagttgttgatatttcaaaaattgtttttaaacaaattaattttgtctgcagGTATTTTATGTATGATGGCCTGAAACACTCTTGTGTTGAGGGAAATCATATTGTTAATGTTTTCTCATTCTCAAAAGCATATGGAATGATGGGATGGCGG
                                     aattaat  putative branch site (score: 3)
                                           ttttgtct  CT-rich tract
         ttgatatttcaaaaat  TA-rich tract