1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaattaaattaaataaatatgtagtcaaaatgtacaacttttattcaaacccgaatgcatcaatatatataatgtaactatatttagagagaatgagaaaaggggtgtctcagtcacagtcacggtcacatctgaaaggtttgctgtaaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCTCTCCAGCTGGTAAATTACTTGAAACATTTATTTTTCATGA
species | Glycine max |
transcript | GLYMA15G00560.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTCEST: gi|13125321|gb|BG315891.1|BG315891
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: CTATTACGGACATTAACATTGCCGNTGAATCCGGAGAATTTGACACTGAG GGGCTTTTGGCTAAAGCAAAGTTTCATEST: gi|31561420|gb|CD487258.1|CD487258
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCAT
EST: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTCEST: gi|7685965|gb|AW756613.1|AW756613
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
EST: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAG GGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
genomic: CTATTACGGACATTAACATTGCCGTTGAATCCGGAGAATTTGACACTGAGgtaattaaat ... taaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTC
ggggtgtctcagtcacagtcacggtcacatctgaaaggtttgctgtaaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCTCTCCAGCTGGTAAATTACTTGAAACATTTATTTTTCATGA
tgtaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattaaattaaataaatatgtagtcaaaatgtacaacttttattcaaacccgaatgcatcaatatatataatgtaactatatttagagagaatgagaaaaggggtgtctcagtcacagtcacggtcacatctgaaaggtttgctgtaaaacgtagGGGCTCTTGGCTAAGGCAAAGTTTCATGTCAACTACAAGGATAAAGCCCTCATCAAGCCTCTCCAGCTGGTAAATTACTTGAAACATTTATTTTTCATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG