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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagccttcaactgttattaaatgttattaacttatttggggtgtacatttactatatctttttgtgaataaactatcctggatttctctgtcataggagaaagttgatgattcttattctcttgaaaattgtagATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAG

Basic information

species Glycine max
transcript GLYMA15G00380.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA15G00380.2 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G053004_T03 (Zea mays), 3'ss of exon 8
------------------gtatagccttcaactgt-tattaaatgttat---taacttatttggggtgtacatttactatatctttttgtgaataaact-----atcctggatttctctgtcataggagaaagttgatgattcttattctcttgaaaattgtagATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAG
                    |||    |  |  || ||  | ||   |    || | || |  || | |||| ||  | | || ||     ||| |  |     |   | |||  | |  |  |   | ||   |  || |  |  || || |||    |  |||| || ||||| |||||  |||| |||   |||||| ||||||||||||| ||||||||||| || ||||| || || || ||||| |||||  |||| |
gtaataataataggaattccataataatacatagtgtaacagatacaacaactaccctactctggttttacaatttttttgtcattagccaaatcatgttttagacagtagataccacctttttccaataattgttctggtattctttttcatgat--cttcagATTCCATTCTGCGTGGTAATTGGCTGGATGATGGGACAAGAAATGGACTTGAATTTTCAACTGTTCGAGACAGCGACTCTCTTTATAACTGTACTAGTGG

upper sequence: GLYMA15G00380.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0018g01840.t01 (Vitis vinifera), 3'ss of exon 9
gtatagccttcaactgttattaaatgttattaacttatttggggtgtacatttactatatctttttgtgaataaactatcctggatttctctgtcataggagaaagttgatgattcttattctcttgaaaattgtagATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAG
                                   |  ||| | |  |  | ||  |||  | | |   |  |   | |  |   | |   ||  |||     | | | | || |||| | || ||||  |||| |||| || ||||||||||||||||| |||   |||||| ||  ||||||||| ||||||||||| |||||||||||||| || |||||| | ||| ||||||
--------------------------------gggtccttgagat-cagttctatgataaatatat---agcatggtgtttttcttattagtga-atattgagaggcttaagaatcttgtgctgttgatgattgcagATTCCCTTCTGTGTGGTTGTTGGTTGGATTATGGGACAACCAATGGACTTGAATTTTCAACTCTTTGAGACTGCCACTCTCTTTATCGCGGTGCTAGTAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8825719|gb|BE209385.1|BE209385
EST:     TCACTATTGGAGTTGCTATTGGATCATCTACACAGATATCTATGTTTGTG                         ATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTA
genomic: TCACTATTGGAGTTGCTATTGGATCATCTACACAGATATCTATGTTTGTGgtatagcctt ... aaaattgtagATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTA
EST: gi|208047251|gb|GD844348.1|GD844348
EST:     CTATGTCTGTG                         ATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTA
genomic: CTATGTTTGTGgtatagcctt ... aaaattgtagATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTA
EST: gi|21887557|gb|BQ740770.1|BQ740770
EST:     TCACTATTGGAGTTGCTATTGGATCATCTACACAGATATCTATGTTTGTG                         ATCCCTTTCTGTGTGTTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTA
genomic: TCACTATTGGAGTTGCTATTGGATCATCTACACAGATATCTATGTTTGTGgtatagcctt ... aaaattgtagATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatttctctgtcataggagaaagttgatgattcttattctcttgaaaattgtagATCCCTTTCTGTGTGGTTGTTGGATGGTGCATGGGAAAAGAAATGGACTTAAATTTTCAACTATTTGAGACTGCCACACTTTTTATCACTGTGTTAGTAG
                      agttgat  putative branch site (score: 5)
                              attcttatt  TA-rich tract