Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   
6  
 5'  3'   
7  
 5'  3'   
8  
 5'  3'   
9  
 5'  3'   
10  
 5'  3'   
11  
 5'  3'   
12  
 5'  3'   
13  
 5'  3'   
14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatatttttaagagttcagttggatctctccatttatatcctgtttcaagatgctgttttggtgtttgttcattcttgtatattatggttatggtaatttaaactgtcattcttaccttttttttattccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGAAGATGAAGAAAAAAAGCCTAAGACAAAGACAGTGAAGGAAACAACTTA

Basic information

species Glycine max
transcript GLYMA14G40320.2
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|57574607|gb|CX547582.1|CX547582
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: gi|193649075|gb|FK600202.1|FK600202
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: gi|298173461|gb|HO016797.1|HO016797
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: gi|58019806|gb|CX706548.1|CX706548
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: gi|163922973|gb|EH039569.1|EH039569
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGC
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGC
EST: gi|298194890|gb|HO043362.1|HO043362
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGA
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGA
EST: gi|193710049|gb|FK643349.1|FK643349
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: gi|208219473|gb|GE020571.1|GE020571
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAG
EST: gi|193341243|gb|FK305545.1|FK305545
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
EST: gi|254328195|gb|GR835160.1|GR835160
EST:     TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCAT                         CTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG
genomic: TGTGGAGGTTCCCGCTGATGAAGATGATTCCAGTGATGAAGAGGATTCATgtatgtatat ... ccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggttatggtaatttaaactgtcattcttaccttttttttattccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGAAGATGAAGAAAAAAAGCCTAAGACAAAGACAGTGAAGGAAACAACTTA
                          ttcttac  putative branch site (score: 2)
 ctgtcattcttacctt  CT-rich tract
 ttaccttttttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatgtatatttttaagagttcagttggatctctccatttatatcctgtttcaagatgctgttttggtgtttgttcattcttgtatattatggttatggtaatttaaactgtcattcttaccttttttttattccttgaacagCTGAAAGCAGCTCCAAGGAGGAAAGCGAAGATGAAGATGCTGATAAAAGTGAAGATGAAGAAAAAAAGCCTAAGACAAAGACAGTGAAGGAAACAACTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA