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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaaaaatttttggtttttgtctttttaaagtttattgatgaatgaacttatctgatatgaaactgttctagGTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGAAGACATATCCCGTCTGAACTGTTTGTAAAAGATATAGAGAAAACGATAA

Basic information

species Glycine max
transcript GLYMA14G39890.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G39890.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0001g00500.t01 (Vitis vinifera), 3'ss of exon 8
gtactaaaaatttttggtttttgtctttttaaagttta--ttgatgaatgaacttatctgatatgaaactgttct----agGTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGAAGACATATCCCGTCTGAACTGTTTGTAAAAGATATAGAGAAAACGATAA
|||| |   |  |   | |||  |   |  ||  ||    ||||||||||   || |     ||| |||   |||    ||||||||||||||||| ||||| | || |||||||||||| | ||||||    | ||| |||| |||||     |  ||||||| |||||    | |||||
gtaccatgcacct---gctttcttaactgcaagtttggatttgatgaatgttattctgattaatggaaccactctgtccagGTCCGGATGTTGGGTTCAGGCCGTCCTTTTCTTGTTGAGATACAAAATTCTCGCCATGTCCCATCTGAGGCACTCATAAAAGAAATAGAAGTGAAGATAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19452333|gb|BM953743.1|BM953743
EST:     GCCAAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGAT                         GTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGA
genomic: GCCAAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGATgtactaaaaa ... actgttctagGTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGA
EST: gi|14259851|gb|BG882759.1|BG882759
EST:     GCCAAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGAT                         GTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGA
genomic: GCCAAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGATgtactaaaaa ... actgttctagGTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGA
EST: gi|58017398|gb|CX704140.1|CX704140
EST:     AAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGAT                         GTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGA
genomic: AAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGATgtactaaaaa ... actgttctagGTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGA
EST: gi|58017203|gb|CX703945.1|CX703945
EST:     GCCAAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGAT                         GTCCGGATG-TGGGTTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGG
genomic: GCCAAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGATgtactaaaaa ... actgttctagGTCCGGATGTTGGG-TCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGG
EST: gi|51342063|gb|CO983330.1|CO983330
EST:     GCCAAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGAT                         GTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGA
genomic: GCCAAGGTGATAGTTTTAAGTTTCATGCTGCAGGCAGAGAAGATATTGATgtactaaaaa ... actgttctagGTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtctttttaaagtttattgatgaatgaacttatctgatatgaaactgttctagGTCCGGATGTTGGGTCCAGGCAGGCCATTTCTTGTTGAGGTGCAAAATGGAAGACATATCCCGTCTGAACTGTTTGTAAAAGATATAGAGAAAACGATAA
                                              ctgttct  CT-rich tract
     tttttaaagtttattg  TA-rich tract