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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgactcatacatcattactttctccattttgacacctactttgtgaagtgtgttattatgcatgtctggctggaatatgaggttttccacttgatatacagAGTGACACGGTGATTGCAATTTTCAAGAAGATGAAGTTATGTGGCTGCCACCCTGATTCTGAAACATACAATATAATGATTGACTGTTGTACCATCCTAA

Basic information

species Glycine max
transcript GLYMA14G39830.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208133491|gb|GD929142.1|GD929142
EST:     GAACACATATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAGGAA                         AGTGACACGGTGATTGCAATTTTCAAGAAGATGAAGTTATGTGGCTGCCAC
genomic: GAACACATATGTACAACACAGTGTTACATTATCTTGTTGAAGCCAAGGAAgtgagtgact ... tgatatacagAGTGACACGGTGATTGCAATTTTCAAGAAGATGAAGTTATGTGGCTGCCAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtgtgttattatgcatgtctggctggaatatgaggttttccacttgatatacagAGTGACACGGTGATTGCAATTTTCAAGAAGATGAAGTTATGTGGCTGCCACCCTGATTCTGAAACATACAATATAATGATTGACTGTTGTACCATCCTAA
                                          acttgat  putative branch site (score: 5)
                                    ttttccactt  CT-rich tract
      ttattat  TA-rich tract