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...tagcagacatgaactttaataactctaccttggctattgctttgctgtctactatctcgggccatcagttgaagttgatatacctttttgtttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG
species | Glycine max |
transcript | GLYMA14G38600.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|193595184|gb|FK553917.1|FK553917
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACEST: gi|193702000|gb|FK635974.1|FK635974
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATAC
EST: GCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|151398862|gb|EV268733.1|EV268733
genomic: GCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|298182522|gb|HO031257.1|HO031257
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|298164264|gb|HO013909.1|HO013909
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|9983218|gb|BE657326.1|BE657326
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|192309791|gb|FG999920.1|FG999920
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTTTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|13787316|gb|BG649908.1|BG649908
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GCGACGATATGTCA ATGAATACGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTACAAEST: gi|192296247|gb|FG992263.1|FG992263
genomic: GCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTTTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|193720942|gb|FK661206.1|FK661206
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|10235771|gb|BE804659.1|BE804659
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAAAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAEST: gi|192299974|gb|FG991820.1|FG991820
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
EST: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCA ATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
genomic: GGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGACGATATGTCAgtaagtattt ... tttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAA
tgtctactatctcgggccatcagttgaagttgatatacctttttgtttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG
agttgat putative branch site (score: 5)
cctttttgtttatctc putative PPT
tttttgtttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcagacatgaactttaataactctaccttggctattgctttgctgtctactatctcgggccatcagttgaagttgatatacctttttgtttatctcagATGAATATGTTATTTGCCTTGGGTGCAAGAGTCCGGATACTATACTTTCAAAGGAGAATCGTCTCTTCTTTCTCCGGTGTGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - -catgaac
- - - - - - - - - - - ctctacc
- - - - - - - - - - - - - - - - gctattg
- - - - - - - - - - - - - - - - - - - - - tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcag