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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaacataaaaggaccaaaatattcttatcattatattttgcatattgtgtgagtgcttgtgctccacatttattatcatttctatatgtgcatacgtagGAAAAGCTGCCACCTACCGATTCCAGGTTAAGACCAGATCAAAGGCATTTGGAAAATGGGGAGTATGACATGGCAAATTCAGAAAAGTTGCGGCTAGAAC

Basic information

species Glycine max
transcript GLYMA14G33410.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G33410.1 (Glycine max), 3'ss of exon 8
lower sequence: PP1S67_260V6.1 (Physcomitrella patens), 3'ss of exon 8
----------------------------------------------ttaacataaa-aggaccaaaatattcttatcattatattttgcatattgt-----------gtgagtgcttgtgc---tccacatttattatcatttctatatg--tgcatacgtagGAAAAGCTGCCACCTACCGATTCCAGGTTAAGACCAGATCAAAGGCATTTGGAAAATGGGGAGTATGACATGGCAAATTCAGAAAAGTTGCGGCTAGAAC
                                              || || || | | | |     | ||  | |  || | |||| | |   ||            ||| |   |   |   || ||||| ||   | | |  || |   |   |  |||||||||| |||||||||| ||||| ||||| ||||| |||||||| ||| |||| ||||| || |||||    || |||||||||||  |||| || ||||
gtgagtatctgcaattttcttagacttaaatgcttatactagagatttgacttatatatggctgttttttttctttttttcttttttcctttcagttaataagaaatatgaatcggtagacgagtcaacattcatctacttataaatttaatttattttgtagGAAAAGTTGCCACCTACAGATTCAAGGTTGAGACCTGATCAAAGACATCTGGAGAATGGTGAATATGATGCTGCCAATTCAGAAAAACTGCGACTTGAAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8402756|gb|BE058390.1|BE058390
EST:     ACTTCACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAG                         GAAAAGCTGCCACCTACCGATTCCAGGTTAAGACCAGATCAAAGGCATTTG
genomic: ACTTCACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAGgtattttttt ... gcatacgtagGAAAAGCTGCCACCTACCGATTCCAGGTTAAGACCAGATCAAAGGCATTTG
EST: gi|192319218|gb|FK009130.1|FK009130
EST:     ACTTCACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAG                         GAAAAGCTGCCACCCACCGATTCCAGGTTAAGACCAGATCAAAGGCATTTG
genomic: ACTTCACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTAAAGgtattttttt ... gcatacgtagGAAAAGCTGCCACCTACCGATTCCAGGTTAAGACCAGATCAAAGGCATTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtgagtgcttgtgctccacatttattatcatttctatatgtgcatacgtagGAAAAGCTGCCACCTACCGATTCCAGGTTAAGACCAGATCAAAGGCATTTGGAAAATGGGGAGTATGACATGGCAAATTCAGAAAAGTTGCGGCTAGAAC
                     acatttattatcattt  TA-rich tract