1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...acattgattaataaaagttgtcaaccttgagcaatgattgacatctgctagtcttgcatatggaaattcatagtgctagtaacttctgacattttttcagCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTACGAGACACTTAGTGCAGAAGAAATCAGGAGAATACTTCTCCCATATCGGGAAGCAC
species | Glycine max |
transcript | GLYMA14G29810.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CGAG-AGCATATGATCGTGTGAAAGCCCTTTTGAAAAAG CATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTACGAGACAEST: gi|51863760|gb|CV128241.1|CV128241
genomic: CGAGAAGCATATGATCGTGTGAAAGCCCTTTTGAAAAAGgtttgtctga ... attttttcagCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTACGAGACA
EST: TGAAACTCCTTCGAGAAGCATATGATCGTGTGAAAGCCCTTTTGAAAAAG CATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTACGAGACA
genomic: TGAAACTCCTTCGAGAAGCATATGATCGTGTGAAAGCCCTTTTGAAAAAGgtttgtctga ... attttttcagCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTACGAGACA
tgctagtcttgcatatggaaattcatagtgctagtaacttctgacattttttcagCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTACGAGACACTTAGTGCAGAAGAAATCAGGAGAATACTTCTCCCATATCGGGAAGCAC
cattttttc CT-rich tract
aaattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acattgattaataaaagttgtcaaccttgagcaatgattgacatctgctagtcttgcatatggaaattcatagtgctagtaacttctgacattttttcagCATGAGAAGGCATTACATGTGCTGGCAAATGCATTATTAGAGTACGAGACACTTAGTGCAGAAGAAATCAGGAGAATACTTCTCCCATATCGGGAAGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - -aataaaa
- - - - - - - - - -gtcaacc
- - - - - - - - - - - - - - -agcaatg
- - - - - - - - - - - - - - - - - - - - -catctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgctag