1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgtgtattaaaatccccaaaacagaaaagtttagtattctacctgatatgaatcatttactgaaattatacagtagttataacgatacttgtgatttcagGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGAGTAGAATTATTAA
species | Glycine max |
transcript | GLYMA14G22250.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCTTTACAAGCCTGGTGGGCCAGCTCTTAGCCTATACTTCTGCTATCCAG GATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAEST: gi|208073339|gb|GD870714.1|GD870714
genomic: TCTTTACAAGCCTGGTGGGCCAGCTCTT-GCCTATACTTCTGCTATCCAGgttagtttga ... gtgatttcagGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTA
EST: CTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAG GATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAEST: gi|51341392|gb|CO982709.1|CO982709
genomic: CTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGgttagtttga ... gtgatttcagGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTA
EST: CTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAG GATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTA
genomic: CTCTTTACAAGCCTGGTGGGCCAGCTCTTGCCTATACTTCTGCTATCCAGgttagtttga ... gtgatttcagGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTA
atatgaatcatttactgaaattatacagtagttataacgatacttgtgatttcagGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGAGTAGAATTATTAA
ttataac putative branch site (score: 2)
atttactgaaattata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgtattaaaatccccaaaacagaaaagtttagtattctacctgatatgaatcatttactgaaattatacagtagttataacgatacttgtgatttcagGATTGTGTCGGGCTAACGGGGCAAAGAGTAAAGGAACTAAAGAGCTACTTAGACAAAGAAAATTCTGCTATGGAGGTGGTGGTTTGAGTAGAATTATTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - -ccccaaa
- - - - - - - - - - - - - - - - - - - ctacctg