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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctattgtctctatatgcacatgtataaggcagtcatatgcgcatataatattcatgcccatttattgctttttgcagGTTGAGATCATGATAAGGCTGCGGCATCCTAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAA

Basic information

species Glycine max
transcript GLYMA14G10790.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10790.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 3'ss of exon 7
----------------------gtaagctattgtctctatatgcacatgta--taaggcagtcatatgcgcatataatattcatgcccatttattgctttttgcagGTTGAGATCATGATAAGGCTGCGGCATCCTAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAA
                       ||   |||  | |  ||    |     |  | ||   |   |||   |||  || ||| || ||   |  ||||||  | |||||||| |||||| | ||  || ||||||||||||| || || || ||||||||| |||||||| ||||| || |||||||  | ||||||||||| ||||
gtaagtgcctgaaatttacatcttacattataatattaatcaaaatggtcaattcagttggctttataaacattcaa-attaataccttctggttgcttcatacagGTTGAAATCATGTTGAGATTGAGGCATCCTAATGTTGTTCTTTTTATGGGAGCTGTTACTCGCCCCCCAAATCTCTCTATACTCACAGAGTTTCTCCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tataaggcagtcatatgcgcatataatattcatgcccatttattgctttttgcagGTTGAGATCATGATAAGGCTGCGGCATCCTAATGTCGTGCTCTTCATGGGAGCTATTACTCGCTCCCCACATTTCTCTATCTTGACAGAGTTTCTTCCAA
                                          ttgcttttt  CT-rich tract
                    atataatattcat  TA-rich tract