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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatttgtctctctcccttggtttagtaaatacatgcttttttttggtatatcagtgaataatttaatccattgttccattgtctgttttaattttcaaatgtgtttgttggttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG

Basic information

species Glycine max
transcript GLYMA14G10520.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G10520.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv04s0008g00650.t01 (Vitis vinifera), 3'ss of exon 8
-------------------------------------gtaataatttgtctctctcccttggtttag---taaatacatgcttttttttggtatatcagtgaat--aatttaatccattgttccattgtctg----ttttaattttcaaatgtgtttgttggttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
                                            ||| |||| | | |    | ||    | | |   | || ||| |   | | ||  |  ||  ||| | | ||   |||    | | ||    || |     | | | |  |   ||  | |||||| || |||||||  |||||| ||||||||||||||||||||
gtaatctctctctctccccccccctctctccctctctccctctctttttctcccccacccaatctaagcctgagttgttcctctttctctctctctctctccatctaatgtgagcctgagttgatatttttggagcttcttgacctgacaagcatgcttttttgcagTGCGGAGATTCTCATTGGAGGTGCCAAGGGCCCACCTGACAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11688550|gb|BF596226.1|BF596226
EST:     GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAAgtaataattt ... gttggttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
EST: gi|193632285|gb|FK581869.1|FK581869
EST:     GTCAATTAAGCGGTCTTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTCAATTAAGCGGTC-TTGCAAgtaataattt ... gttggttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
EST: gi|193581283|gb|FK535510.1|FK535510
EST:     GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAAgtaataattt ... gttggttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
EST: gi|10843821|gb|BF067074.1|BF067074
EST:     GTTATTGCGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAAgtaataattt ... gttggttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
EST: gi|15287707|gb|BI471598.1|BI471598
EST:     GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAA                         TGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
genomic: GTTATTGGGAAAAGAGGGGCAACAATTTTGTCAATTAAGCGGTCTTGCAAgtaataattt ... gttggttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaatccattgttccattgtctgttttaattttcaaatgtgtttgttggttcagTGCCGAAATTCTCACGGGAGGTCCCAAGGGCCCACCTGACAAG
                        ttttaat  putative branch site (score: 3)
                        ttttaattttcaaatg  TA-rich tract