Sequence
atgc intronic sequence ATGC exonic sequencegtttgctgcttataatgtaaaacttggactctgattttcactaaatatttagtatgcttctgtgacttagcagaaacagtgtgttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCTAATGATGAGGGGACCGTGATCGAATGTGATAAGGCATGTTATCCAATG
Basic information
species | Glycine max |
transcript | GLYMA14G07850.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G07850.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------------gtt-tgctgcttataatgtaaaacttggactctgattttcactaaa--tatttag----tatgcttct---gtgacttagcagaaacagt-gtgttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCTAATGATGAGGGGACCGTGATCGAATGTGATAAGGCATGTTATCCAATG
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gtctggttgtcatcttgaaactattaaatattgattcagttgtgcaattgatcaagtcactcttctagcctatcttctaatgcacttgtttggaaattgtactttgtaaatgttttgaatgacatgattgtctgcgtgcagATGGTTCTCAGTGGTGAAGCACAATTTTCTAGACGAATAGTAACTGTTTCAAACAGTGATGGAAGAGTAATCACTAAAGAAAAGCCAATTTATTCAGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151403337|gb|EV273147.1|EV273147EST: GTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAG ATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCT
genomic: GTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgct ... gttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcactaaatatttagtatgcttctgtgacttagcagaaacagtgtgttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCTAATGATGAGGGGACCGTGATCGAATGTGATAAGGCATGTTATCCAATG
cactaaa putative branch site (score: 2)
aaatatttagtat TA-rich tract