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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgctgcttataatgtaaaacttggactctgattttcactaaatatttagtatgcttctgtgacttagcagaaacagtgtgttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCTAATGATGAGGGGACCGTGATCGAATGTGATAAGGCATGTTATCCAATG

Basic information

species Glycine max
transcript GLYMA14G07850.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07850.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv18s0001g12950.t01 (Vitis vinifera), 3'ss of exon 8
--------------------------------------gtt-tgctgcttataatgtaaaacttggactctgattttcactaaa--tatttag----tatgcttct---gtgacttagcagaaacagt-gtgttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCTAATGATGAGGGGACCGTGATCGAATGTGATAAGGCATGTTATCCAATG
                                      ||| |||   | || | || |  |||  |  ||   ||  | |  |  | ||| |    | | |||      ||  ||    || |   | || | | ||||||||||||| |||||||||| ||||| |||||||| ||||||||| ||||| ||   ||| || |  || |||      || ||| ||  |||| || ||
gtctggttgtcatcttgaaactattaaatattgattcagttgtgcaattgatcaagtcactcttctagcctatcttctaatgcacttgtttggaaattgtactttgtaaatgttttgaatgacatgattgtctgcgtgcagATGGTTCTCAGTGGTGAAGCACAATTTTCTAGACGAATAGTAACTGTTTCAAACAGTGATGGAAGAGTAATCACTAAAGAAAAGCCAATTTATTCAGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151403337|gb|EV273147.1|EV273147
EST:     GTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAG                         ATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCT
genomic: GTTGTATGAGATCTGATAAAGGGCCATGGCAGGATCCAAACATTTTAAAGgtttgctgct ... gttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcactaaatatttagtatgcttctgtgacttagcagaaacagtgtgttcatgcagATGGTTCTTAGTGGTGAAGTACAATGTTCTAGACAAATAGTAACAGTTTCTAATGATGAGGGGACCGTGATCGAATGTGATAAGGCATGTTATCCAATG
 cactaaa  putative branch site (score: 2)
     aaatatttagtat  TA-rich tract