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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatattaaaactgtttactttttgtttgattagaatgtggtaatgaaattcagataaattcactactctttatgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTC

Basic information

species Glycine max
transcript GLYMA14G07060.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G07060.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G151934_T02 (Zea mays), 3'ss of exon 9
---------------------------gtatgatattaaaactgtttactttttgtttgattagaatgtggtaatgaa--attcagataaattcactactctttatgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTC
                             |  |  |   || |    |||  | || |   |  |   ||  |    |  |    || | ||||     | || |   || || | ||  |  |||||| ||| || || || ||||| ||  | ||  || | |  ||| ||||||| || |||||||||||||| | |||||||||||| ||||| |||||  
gtaagttcaactcaagctatgaactgaaaagaagctcttaatttcaaactgctcgtattgatttagcatgacagcagatgagaacgacagattctgccgttttgactgttcat-tatttgtgtagATACTTAGGAGGCCCAGGATTGGTGGAAACCGGTTACTGGACATGAGAACTCAGCCACAAAAACTGACTAGGAGATGTGAAGTTACTGCAATACTTGTCT

upper sequence: GLYMA14G07060.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0019g02430.t01 (Vitis vinifera), 3'ss of exon 9
---------------------------------------------------------gtatgatattaaaactgtttactttttgtttgattagaatgtggtaatgaaattcagataaattcactactctttatgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTC
                                                          |||||   ||  |||   |  || ||| ||| || |  | || |  |   |||   ||   || |    | | | |  || | |    ||| ||  ||| |||||| || ||| ||| ||| || |||||| | || ||| || | ||||||||||| |||||| ||||||||||||||||||| ||||      
gtatgatatttgaatactacacaattttcctttgcttatactgaattctaaaatgtcttatgactatagtactaaatgtttattgcttg-ttcgtgtttgtttgtttgatt---atctgtttatgcatttctttttttaaca----gATCCAAGTACTTAGAAGGCCCAGACTTGCAGGACAGCGACTAGTAGGAATGAGATCACAACCTCAAAAGCTGACTCGAAAATGTGAAGTTACAGCTATTC------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtaatgaaattcagataaattcactactctttatgatttatatgttgattcagATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATCGGGATGCGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTC
                                            tgttgat  putative branch site (score: 4)
                               tttatgatttatatgt  TA-rich tract