1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtggcttttcctttgtttagagctacttgaaagaaatattaatttattttgaatatcaacatcatgctgatgattatatggtttgtttagATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT
species | Glycine max |
transcript | GLYMA14G05810.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATT ATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGEST: gi|120496950|gb|EH225117.1|EH225117
genomic: AAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATTgtatgtggct ... gtttgtttagATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAG
EST: AACTTCTTGAAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATT ATGGTTGGGGAATCTGEST: gi|31309484|gb|CD394687.1|CD394687
genomic: AACTTCTTGAAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATTgtatgtggct ... gtttgtttagATGGTTGGGGAATCTG
EST: GAGCGAGGCAAAATAATCCACGAGAGAGGCATAATT ATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGEST: gi|193362895|gb|FK327469.1|FK327469
genomic: GAGCGAGGCAAAATAATCCACGAGAGAGGCATAATTgtatgtggct ... gtttgtttagATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAG
EST: AAGGAGAGCGAGGTCTAAAATTAATTCCACGAGAGAGGCATAATT ATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGEST: gi|31312366|gb|CD397569.1|CD397569
genomic: AAGGAGAGCGAGG-C-AAAA-TAA-TCCACGAGAGAGGCATAATTgtatgtggct ... gtttgtttagATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAG
EST: GAGAGGCATAATT ATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGEST: gi|120496969|gb|EH225136.1|EH225136
genomic: GAGAGGCATAATTgtatgtggct ... gtttgtttagATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAG
EST: AACTTCTTGAAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATT ATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAG
genomic: AACTTCTTGAAGGAGAGCGAGGCAAAATAATCCACGAGAGAGGCATAATTgtatgtggct ... gtttgtttagATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAG
atattaatttattttgaatatcaacatcatgctgatgattatatggtttgtttagATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT
tttgttt CT-rich tract
aatttattttgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggcttttcctttgtttagagctacttgaaagaaatattaatttattttgaatatcaacatcatgctgatgattatatggtttgtttagATGGTTGGGGAATCTGGTCTCTTTACCCCGGACGATATTGCCTATGTTCAGGAAGCTGGTGTTAAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG