1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtcattcaatatcaagattcaaagtttttatttttctcagggaaaaattgaagtgactattgcaggaggaagagttgtttgggaaaataatgaactaaagGTCACTCCTGGCACTGGGAGATACATCCAAATGCCACCTTTTAGTTATCTGTTTGATGGACTGGACAAAAAGGACGCCATTTATCTAAATTCCCTTCAGG
species | Glycine max |
transcript | GLYMA14G04030.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACCGGCGTTTTGCAG GTCACTCCTGGCACTGGGAGATACATCCAAATGCCACCTTTTAGTTATCTG
genomic: GAGGACATGATAAGGCCCTTCAAGCTGCCCTTTCAACCGGCGTTTTGCAGgtttcacatt ... tgaactaaagGTCACTCCTGGCACTGGGAGATACATCCAAATGCCACCTTTTAGTTATCTG
aattgaagtgactattgcaggaggaagagttgtttgggaaaataatgaactaaagGTCACTCCTGGCACTGGGAGATACATCCAAATGCCACCTTTTAGTTATCTGTTTGATGGACTGGACAAAAAGGACGCCATTTATCTAAATTCCCTTCAGG
aaaataatgaactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattcaatatcaagattcaaagtttttatttttctcagggaaaaattgaagtgactattgcaggaggaagagttgtttgggaaaataatgaactaaagGTCACTCCTGGCACTGGGAGATACATCCAAATGCCACCTTTTAGTTATCTGTTTGATGGACTGGACAAAAAGGACGCCATTTATCTAAATTCCCTTCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- cattcaa
- - - - - - - - - - - - - - - - - - - - -gaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - tgaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtttggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaataa