Sequence
atgc intronic sequence ATGC exonic sequence...gctagctttctttaattgcagatgtgcatcaattatgtaatagcttatagttagcatcatttaggaattttcttattactgagttaccttttatggtcagTGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAG
Basic information
species | Glycine max |
transcript | GLYMA14G02550.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G02550.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os07g32670.1 (Oryza sativa), 3'ss of exon 7
gc-tagctttctttaattgcagatgtgcatcaattatgtaatagcttatagttagcatcatttaggaattttcttattactgagttaccttttatggtcagTGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAG
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gcatcacagtcatatacctta-atatcaatccactattattttttttttgatttaagtgatagagcaatggttgtgatgctgtttgtatttatactctcagTGTTGGTGCTGGGTGTTCTCAACTTCTATCAGATATGCAAGCCTTCAAG
upper sequence: GLYMA14G02550.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G076387_T01 (Zea mays), 3'ss of exon 7
-----gctagctttctttaattgcagatgtgcatcaattatgtaatagcttatagttagca--tcatttaggaattttcttattactgagttaccttttatggtcagTGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAG
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tgtgtgatgatgtcctatatctacatttctg--tcaat---gcaatt-cttatacttgctaagtaataaaacagtttttgtgatgcttttttttattatttc-tcagTCTTGGTGCTGGATGCTCTCAACTTCTATCAGATATGCAGGCTTTCAAG
upper sequence: GLYMA14G02550.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv19s0090g00690.t01 (Vitis vinifera), 3'ss of exon 8
---gctagc-tttctttaattgcagatgtgcatcaattatgtaatagcttatagttag-catcatttaggaattt-tcttattactgagttaccttttatggtcagTGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAG
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gaagcaagtgtttcctctactaaagataaatattctttttgttgttcctttaatctaggcattctttgacaatttgtctcatt------ttttcccctatgctcagTGTTGGTGCTGGATGTTCTCAACTACTTTCAGACATGCAGGCTTTCAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21256661|gb|BQ453549.1|BQ453549EST: ACAGAAGATCTAATCAGGGAAACAGAGGAGTTTGTGCTGCGGACAGGGAG TGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCNNNNNNN
genomic: ACAGAAGATCTAATCAGGGAAACAGAGGAGTTTGTGCTGCGGACAGGGAGgtctgtatgc ... ttatggtcagTGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatagttagcatcatttaggaattttcttattactgagttaccttttatggtcagTGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAG
ttacctttt CT-rich tract
aattttcttattact TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctagctttctttaattgcagatgtgcatcaattatgtaatagcttatagttagcatcatttaggaattttcttattactgagttaccttttatggtcagTGTTGGTGCTGGGTGCTCTCAATTGCTCTCAGATATGCAGGCTTTCAAG
- - - - - - - - -gcagatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgagtt