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gtgacttttttacccttaagtacgattgtcaagtaaattaaggaattattttgtgttgaatttagagtaaaattctctagcatgaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAGAACAAGCCACTGATAATGCTATCTTAGATCAG
species | Glycine max |
transcript | GLYMA14G02220.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAG GTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAEST: gi|192301996|gb|FG995166.1|FG995166
genomic: ATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAGgtgacttttt ... gaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGA
EST: ATGA-TCTA-TGCTGATAAGCTTCTCCCTGGATGCACCACAG-GGAGCAG GTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAEST: gi|31466922|gb|CD408950.1|CD408950
genomic: ATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAGgtgacttttt ... gaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGA
EST: GGATGCACCACAGTGGAGCAG GTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAEST: gi|9898860|gb|BE607828.1|BE607828
genomic: GGATGCACCACAGTGGAGCAGgtgacttttt ... gaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGA
EST: ATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAG GTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAEST: gi|151410964|gb|EV280779.1|EV280779
genomic: ATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAGgtgacttttt ... gaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGA
EST: ATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAG GTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAEST: gi|12773062|gb|BG237989.1|BG237989
genomic: ATGATTCTATTGCTGATAAGCTTCTCCCTGGATGCACCACAGTGGAGCAGgtgacttttt ... gaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGA
EST: CTCCCTGGATGCACCACAGTGGAGCAG GTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGA
genomic: CTCCCTGGATGCACCACAGTGGAGCAGgtgacttttt ... gaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGA
taaggaattattttgtgttgaatttagagtaaaattctctagcatgaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAGAACAAGCCACTGATAATGCTATCTTAGATCAG
aattattttgtgttga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacttttttacccttaagtacgattgtcaagtaaattaaggaattattttgtgttgaatttagagtaaaattctctagcatgaattgccagGTCAAAGACTTGTTGTTACAGAAATGCCAAGAGGTGGAGCAAACAGCTAGAGAACAAGCCACTGATAATGCTATCTTAGATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA