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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttgttaaatgagattacaatcaccatcagatactgttattattaattcaatctgctggcagtgtaatcaaaacaagatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTTGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGTATGTCATTTACATATGATGGCGTTCCTCTTCTTGCCATGTTAGATGA

Basic information

species Glycine max
transcript GLYMA14G02180.3
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G02180.3 (Glycine max), 3'ss of exon 8
lower sequence: Vv19s0090g01230.t01 (Vitis vinifera), 3'ss of exon 6
gtatttgttaaatgagattacaatcaccatcagatactgttattattaattcaatctgctggcagtgtaatcaaaacaagatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTTGATACATTGGTTGCT-AAAACTCGTGCATGGGAAGAAGATCATGGTATGTCATTTACATATGATGGCGTTCCTCTTCTTGCCATGTTAGATGA
        | ||  |  | | |||   ||| | | |     |    |||| ||  ||| |     ||| | |    |  |||| |||   |||||||||       || || | ||||      || |||| | ||||| |||||||||||  |||||| | |||||||||||||||||||||||  ||||||| || || || |||||||| ||||||||| |||||| 
--------tgaa--aactgataatt-tcattaaaaagaagaa--gataatccatgctgtt----atgttagcttggcttgatg-tgct-tattattgga-------tggttttcttggctc---tgtagCTCTTGTTGACACATTGGTTGCCCAAAACTGGGGCATGGGAAGAAGATCATGGTATACCATTTACTTACGACGGTGTTCCTCTCCTTGCCATGCTAGATG-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193723037|gb|FK656731.1|FK656731
EST:     AAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAG                         CTTTGGTTGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTTGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|38193636|gb|CF922842.1|CF922842
EST:     AAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAG                         CTTTGGTTGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
genomic: AAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTTGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATG
EST: gi|192314484|gb|FK008426.1|FK008426
EST:     AAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAGAAT-CCAG                         CTTTGGT-GATACATGGGT-GCTAAA-CTCGTGCATGG
genomic: AAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTTGATACATTGGTTGCTAAAACTCGTGCATGG
EST: gi|9258416|gb|BE346563.1|BE346563
EST:     AAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAN                         CTTTGGTTGATACATTGGTTGCTAAAACT
genomic: AAACCTCAAACGTGCAGAGAAAGCACGGATATTGGTCAACAAAATTCCAGgtatttgtta ... gaaaatgcagCTTTGGTTGATACATTGGTTGCTAAAACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaagatgatgccacattattggaataattttgtttctgttggtgaaaatgcagCTTTGGTTGATACATTGGTTGCTAAAACTCGTGCATGGGAAGAAGATCATGGTATGTCATTTACATATGATGGCGTTCCTCTTCTTGCCATGTTAGATGA
                attattggaataattt  TA-rich tract