1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cattgcttatgtaaggacttggaaatatctgatttcatggagataagtaaccatgccactcttccctaaaactaaaatattgtctgtaaatgtggaacagGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAAGACAGTATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCT
species | Glycine max |
transcript | GLYMA13G44940.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTG GCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAEST: gi|209727642|gb|BW652015.1|BW652015
genomic: ACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTGgtaaattgta ... tgtggaacagGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAA
EST: ATACGCGATGGAAGGATGGATAAGTTTTACTG GCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAEST: gi|51342164|gb|CO983425.1|CO983425
genomic: ATACGCGATGGAAGGATGGATAAGTTTTACTGgtaaattgta ... tgtggaacagGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAA
EST: ACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTG GCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAEST: gi|13789259|gb|BG651850.1|BG651850
genomic: ACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTGgtaaattgta ... tgtggaacagGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAA
EST: ACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTG GCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAEST: gi|193403284|gb|FK369454.1|FK369454
genomic: ACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTGgtaaattgta ... tgtggaacagGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAA
EST: ACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTG GCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAA
genomic: ACTCTTTACGCTCCACTGATACGCGATGGAAGGATGGATAAGTTTTACTGgtaaattgta ... tgtggaacagGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAA
agtaaccatgccactcttccctaaaactaaaatattgtctgtaaatgtggaacagGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAAGACAGTATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCT
aactaaa putative branch site (score: 2)
taaaactaaaatattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattgcttatgtaaggacttggaaatatctgatttcatggagataagtaaccatgccactcttccctaaaactaaaatattgtctgtaaatgtggaacagGCAACCTAACCAGGAAGATATCCTTAATATCGTTCACAGAATGTATGAGAAAGACAGTATATCTAGGGATGAAGTTGAAAGGGTTGTGAACACTTTCCCT
- - gcttatg
- - - - - - - - - - - - - - - - -ttcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtctg