1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttagtttccctgagtcaatttaatttaatttctctttaaagactagactagtattgtgtggtgtgactcttatttttggtctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTGGAATAAAGAAGCTTCAATAACTCGAATTTATGGAAAAGAGACATTCTTG
species | Glycine max |
transcript | GLYMA13G44040.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCG ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTGEST: gi|9983172|gb|BE657280.1|BE657280
genomic: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
EST: CAAGATACTACGACAGGATGGCG ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTGEST: gi|58016331|gb|CX703073.1|CX703073
genomic: CAAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
EST: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCG ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTGEST: gi|213591272|gb|DB983014.1|DB983014
genomic: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
EST: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCG ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTGEST: gi|6747235|gb|AW317691.1|AW317691
genomic: TCCGATGTGTCGGGAGAGGTCATCAAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
EST: AAGATACTACGACAGGATGGCG ACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
genomic: AAGATACTACGACAGGATGGCGgttagtttcc ... tctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTG
tttaaagactagactagtattgtgtggtgtgactcttatttttggtctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTGGAATAAAGAAGCTTCAATAACTCGAATTTATGGAAAAGAGACATTCTTG
tcttt CT-rich tract
tcttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtttccctgagtcaatttaatttaatttctctttaaagactagactagtattgtgtggtgtgactcttatttttggtctttgacagACCCTGTTGGATATGGTGATGCACTTGTTGCAATATTGCCATCATTTCCTGGAATAAAGAAGCTTCAATAACTCGAATTTATGGAAAAGAGACATTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA