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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattttgtttacactgctgaagattttaattcacaatattggttgtctttttgtgtcacccaatgcattacacttctcaccattgtaaacttaatgcagATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGC

Basic information

species Glycine max
transcript GLYMA13G42890.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G42890.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G21300.1 (Arabidopsis thaliana), 3'ss of exon 8
ttattttgtttacactgctgaagattttaattcacaatattggttgtctttttgtgtcacccaatgcattaca--cttctcaccattgtaaac-ttaatgcagATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGC
               |  | |  || ||  ||||||   ||   | || | | |  ||    ||| | || ||  || |  | | |   ||   ||  | ||||||||||||| || || |||||||| |||||||| || || |||||||| ||||   | || || ||  | ||||| || || |||||||| || || ||
--------------gttataatcatcttc-ttcacatagttaaatttcatctaggttc---taatactttgcagtctaccaatcgtaagaagtgtttttacagATCCCAATCGACCTGGTATGCACATGAAGTTGATCAAGTTTCTGCTAAAGCTTAAATCTCCACGGATCATTTATGTTTCCTGTAATCCTGCAACCTGCGC

upper sequence: GLYMA13G42890.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv09s0002g02670.t01 (Vitis vinifera), 3'ss of exon 8
ttattttgtttacactgctgaagattttaattcacaatattggttgtctttttgtgtcacc--caatgcattacacttctcaccattgtaaacttaatgcagATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGC
  |  |    || |   | | || ||   || |  |||     ||   ||    | | | |       |  |  ||||    | | || |||  |  ||||||||| || |||||||| ||||| || ||| |||||||||| || ||||| || | ||| || ||||| || || ||||| || |||||||||||||||||
--aactgacctaaaactcagtagcttcatatcccgaatcccattttaattaggatataaacattgggcctcttaactttgttctaatgaaaaaatcttgcagATCCAAACCGCCCAGGCATGCATATGAAGCTGATTAAATTTCTTCTAAAGCTCAAGGCGCCACGCATTGTTTACGTCTCATGTAATCCTGCCACATGTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14990950|gb|BI316623.1|BI316623
EST:     ATTGTCATTTCAG                         ATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATC
genomic: ATTGTCATTTCAGgtttcattgc ... cttaatgcagATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATC
EST: gi|10234615|gb|BE803503.1|BE803503
EST:     TGATGAGAATTTTGGGAAGAATTTTCCTAAACCTGACATTGTCATTTCAG                         ATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATC
genomic: TGATGAGAATTTTGGGAAGAATTTTCCTAAACCTGACATTGTCATTTCAGgtttcattgc ... cttaatgcagATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtctttttgtgtcacccaatgcattacacttctcaccattgtaaacttaatgcagATCCCAATCGCCCAGGAATGCACATTAAGTTGATTAAATTCCTGCTAAATCTTAGGGCACCTCGCATAGTGTATGTCTCTTGCAATCCTGCCACATGTGC
                                     attgtaaacttaat  TA-rich tract