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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catttgccatcctgaaacagaagtaaaaggcaatgtttttctttcctagttgttttgcttctattagtttatagcttccaaagtaacatgtcagtttcagGCAATTCTTGCAGGTGCATTTGCTAATAAGGACTTCAACAGGGCCACAGCAACTGCATCCCGAGTTCTACAG

Basic information

species Glycine max
transcript GLYMA13G41460.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51341966|gb|CO983283.1|CO983283
EST:     TTTGGTTGGCAGTGTCTCTTCTTGCGGATGGTCTGGCTGTTGCTGGGCAG                         GCAATTCTTGCAGGTGCATTTGCTAATAAGGACTTCAACAGGGCCACAGCA
genomic: TTTGGTTGGCAGTGTCTCTTCTTGCGGATGGTCTGGCTGTTGCTGGGCAGgttagatatt ... tcagtttcagGCAATTCTTGCAGGTGCATTTGCTAATAAGGACTTCAACAGGGCCACAGCA
EST: gi|192298304|gb|FG992094.1|FG992094
EST:     TTTGGTTGGCAGTGTCTCTTCTTGCGGATGGTCTGGCTGTTGCTGGGCAG                         GCAATTCTTGCAGGTGCATTTGCTAATAAGGACTTCAACAGGGCCACAGCA
genomic: TTTGGTTGGCAGTGTCTCTTCTTGCGGATGGTCTGGCTGTTGCTGGGCAGgttagatatt ... tcagtttcagGCAATTCTTGCAGGTGCATTTGCTAATAAGGACTTCAACAGGGCCACAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctagttgttttgcttctattagtttatagcttccaaagtaacatgtcagtttcagGCAATTCTTGCAGGTGCATTTGCTAATAAGGACTTCAACAGGGCCACAGCAACTGCATCCCGAGTTCTACAG
                                   aagtaac  putative branch site (score: 2)
             ttctattagtttata  TA-rich tract