1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgaattgaattttttcttcattcttctaacactagggaatatttagttgctggcataacttctctgtttctatttttgtcttttctatcaacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTCTTATTGCTCAATTTGATTTGGACAATATCAAATCCATGAGGCATTGCTG
species | Glycine max |
transcript | GLYMA13G39210.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAG GACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTCEST: gi|15200119|gb|BI424183.1|BI424183
genomic: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAGgtaacttttg ... caacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTC
EST: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAG GACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTCEST: gi|4396312|gb|AI495309.1|AI495309
genomic: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAGgtaacttttg ... caacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTC
EST: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAG GACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTCEST: gi|209726298|gb|BW659611.1|BW659611
genomic: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAGgtaacttttg ... caacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTC
EST: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAN GACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTCEST: gi|209726299|gb|BW659612.1|BW659612
genomic: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAGgtaacttttg ... caacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTC
EST: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAG GACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTCEST: gi|21887082|gb|BQ740295.1|BQ740295
genomic: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAGgtaacttttg ... caacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTC
EST: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAG GACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTC
genomic: TGAGCATGGAAAAAGTGAGATAACATTTTATGGAAACTCCTTCATAGCAGgtaacttttg ... caacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTC
tagttgctggcataacttctctgtttctatttttgtcttttctatcaacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTCTTATTGCTCAATTTGATTTGGACAATATCAAATCCATGAGGCATTGCTG
gcataac putative branch site (score: 3)
cttctctgtttctatt CT-rich tract
tatttttgtctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgaattgaattttttcttcattcttctaacactagggaatatttagttgctggcataacttctctgtttctatttttgtcttttctatcaacatgtagGACCTACTGGAGAAATTGTTTCAATTGCTGATGATAAAGAGGAAGCTGTTCTTATTGCTCAATTTGATTTGGACAATATCAAATCCATGAGGCATTGCTG
- - - - - - - - - ttcattc
- - - - - - - - - - - - - -ctaacac
- - - - - - - - - - - - - - - - - - - - - - - - -tgctggc