1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtagtggatggtttttaaagttcttttggtcctcatatattgctttatctgctttatcacctgtataatctgtttgtttggttattctgacagATGCTTTGTGAGGAACGAGGTTGCTTTTTGGAAATAGCCGACTTAATCAGAGGATTAGGCTTAACCATCTTAAAGGGGGTAATGGAAGCTCACAATGACA
species | Glycine max |
transcript | GLYMA13G38930.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTCAAGGATCTGATTCCACCTCGTCAGATGCTAGTGGAG ATGCTTTGTGAGGAACGAGGTTGCTTTTTGGAAATAGCCGACTTAATCAGAEST: gi|18040848|gb|BM309142.1|BM309142
genomic: AGTCGAGGATCTGATTCCACCTCGTCAGATGCTAGTGGAGgtagtggatg ... attctgacagATGCTTTGTGAGGAACGAGGTTGCTTTTTGGAAATAGCCGACTTAATCAGA
EST: GCCCCATTGTAGTCGAGGATCTGATTCCACCTCGTCAGATGCTAGTGGAG ATGCTTTGTGAGGAACGAGGTTGCTTTTTGGAAATAGCCGACTTAATCAGA
genomic: GCCCCATTGTAGTCGAGGATCTGATTCCACCTCGTCAGATGCTAGTGGAGgtagtggatg ... attctgacagATGCTTTGTGAGGAACGAGGTTGCTTTTTGGAAATAGCCGACTTAATCAGA
attgctttatctgctttatcacctgtataatctgtttgtttggttattctgacagATGCTTTGTGAGGAACGAGGTTGCTTTTTGGAAATAGCCGACTTAATCAGAGGATTAGGCTTAACCATCTTAAAGGGGGTAATGGAAGCTCACAATGACA
ttattct CT-rich tract
tgtataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtggatggtttttaaagttcttttggtcctcatatattgctttatctgctttatcacctgtataatctgtttgtttggttattctgacagATGCTTTGTGAGGAACGAGGTTGCTTTTTGGAAATAGCCGACTTAATCAGAGGATTAGGCTTAACCATCTTAAAGGGGGTAATGGAAGCTCACAATGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA