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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaataattttcttttatccttgtgctatttcatgaaagggtcaaaaatatgtaatgctttcacttctagcttcttacttggccactttcttgcagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGAT

Basic information

species Glycine max
transcript GLYMA13G38500.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G38500.1 (Glycine max), 3'ss of exon 8
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 8
gtgagaataattttcttttatccttgtgctatttcatgaaagggtcaaaaatatgtaatgctttcacttctagcttcttacttggccactttcttgcagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGAT
    | |||||    |||    |   | |  | |  |          ||  | | |     |||   ||  |   ||  | || | |  | |   ||||||| || || |||||||| || || || ||||||||||| |||  |||||||||||||||||| ||||| ||||||||||| || |||||||| | ||| 
----gtataatcccatttctctcacttaccttctttt--------tgaatctctttctcagttttgttttaa--ctcacattttgtc--tatggagcagAGGAGTTAGATACCATGAGCCTGAGTATTGGAAATTTGGTGAGAATGGAAACAAGTACTTCCGTCACGCTACTGGACAGTTATACGCCATTTCTAGAGAC

upper sequence: GLYMA13G38500.1 (Glycine max), 3'ss of exon 8
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 8
gtgagaataattttcttttatccttgtgctatttcatgaaagggtcaaaaatatgtaatgctttcacttctagcttcttacttggccactttcttgcagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGAT
  |  ||  || |||   | ||||        |||||       ||||   | |||| |  | | |  ||    || ||   |||          |||||||||| ||||||||||| ||||| |||||||| ||||| ||   ||| ||||| |||||||| || || ||||||||||| || ||||||||||  || 
--gtaaagcatcttccagtttcctc------cttcata------tcaat--tttgtattcttgttaagtcatctttgttttatgga---------gcagAGGGGTGAGGTACCATGAGCCAGAGTACTGGAAGTTTGGTGAAAATGGGAACAAATACTTCCGTCATGCTACTGGACAGTTATACGCCATTTCAAGGGAC

upper sequence: GLYMA13G38500.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 8
gtgagaataattttcttttatccttgtgctatttcatgaaagggtcaaaaatatgtaatgctttcacttctagcttcttacttggccactttcttg---cagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGAT
                    |   ||   |  || | ||  |  |     |  || ||   |||   |  ||| |||||| ||| |||  || |||   ||| || || || ||||||||||| || || ||||||||||| ||||| |||||||| || ||||| ||||| || |||||| | ||||||||||||||||||
-------------------gtaagtgactttcttta-gattgttttggttacgtgaaactgtttagttcttagtttcttatttgtccatatttttgtaacagGGGAGTGAGATACCATGAACCCGAGTATTGGAAATTTGGTGAGGCAGGAAACAAATATTTCCGTCACGCTACAGGACAGCTATATGCCATTTCAAAAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaaaaatatgtaatgctttcacttctagcttcttacttggccactttcttgcagAGGGGTAAGGTACCATGAACCAGAATACTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGCCACGCCACTGGACAGTTGTATGCCATTTCAAAAGAT
                              ttcttac  putative branch site (score: 2)
                                         ccactttctt  putative PPT
     aatatgtaat  TA-rich tract