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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatatatttttttttacttttagaacttttgtattggtaacatagccttagtatttactgattggagaatgttcctgagaatatctggctcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGCACGCGTGGCGGCTATCAACTCTGCTGCTGATAGTGATGAAGATGATGAG

Basic information

species Glycine max
transcript GLYMA13G35580.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G35580.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0094g00870.t01 (Vitis vinifera), 3'ss of exon 8
tcatatatttttttttacttttagaacttt----tgtattggtaacatagccttagt-atttactgat-tggagaatgttcctgagaatatctggctcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGCACGCGTGGCGGCTATCAACTCTGCTGCTGATAGTGATGAAGATGATGAG
     |   |    |||  | |  |||       | | || |||  ||    | | | | ||  || | |  |  |||||  || |  |   ||  |   |   ||||||||  ||||||||||||| || ||||||||||| ||||||||||||| |||  ||   ||| ||||||| || |||| |  |||||| |||||||||
-----tggctggccttatgtatgcaaccccctgatttctttgtattattcggtaaatgagttggtgctattaattatgttaatg-gctttcttgtttgcatcacagGTACAATTTGAAGAAGCTGACCTACGAGGAAAGGAAAGCTAAGTTGATTGAACGATTGAATGCTCTCAACTCAGCAGCTGCTGATGATGATGATGATGAG

upper sequence: GLYMA13G35580.2 (Glycine max), 3'ss of exon 8
lower sequence: Vv00s0174g00190.t01 (Vitis vinifera), 3'ss of exon 8
tcatatatttttttttacttttagaacttttgtatt---ggtaac-atagcct-tagtatttactgattggagaatgttcctgagaatatctggctcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGCACGCGTGGCGGCTATCAACTCTGCTGCTGATAGTGATGAAGATGATGAG
      |||  |||  |    | || || |  || |   | | || ||    | |  |  |   |  || || ||| |   |||  || | |   ||| | | ||| ||||| ||||||| ||||| |||||||||||||||||||||||||| |   |  ||   ||  | |||||||| ||||    |||||| |||||||| 
---ctgattgatttacaaccatcgagctgtgatactcgagatgacgatgatgtatgatggtagttactttgaaaatttgattga--atgtttacttctgtggcagGCACAACTTGAAGAAACTGACATATGAGGAAAGGAAGGCTAAGTTGATAGAGAGGTTGAATGCACTGAACTCTGCGGCTGGGGCTGATGACGATGATGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208074227|gb|GD870384.1|GD870384
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|193578782|gb|FK538114.1|FK538114
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208106422|gb|GD906449.1|GD906449
EST:     AGGAGCCCCCGAAGGAGCACAAGAG                         GTACAGCATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: AGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208295631|gb|GE091754.1|GE091754
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|209716541|gb|BW653903.1|BW653903
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|14999393|gb|BI320351.1|BI320351
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208338737|gb|GE134873.1|GE134873
EST:     GGAGCCCCCGAAGGAGCACTAAGTAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTG
genomic: GGAGCCCCCGAAGGAGCAC-AAG-AGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTG
EST: gi|192320801|gb|FK013891.1|FK013891
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|254349356|gb|GR860154.1|GR860154
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|192320800|gb|FK013890.1|FK013890
EST:     GATCCTACTTTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|31469251|gb|CD411279.1|CD411279
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|31466939|gb|CD408967.1|CD408967
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|193580388|gb|FK538142.1|FK538142
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|17963769|gb|BM270514.1|BM270514
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|193527396|gb|FK487610.1|FK487610
EST:     CCTACTCTCAGGAAAATACTGATAAGGAAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: CCTACTCTCAGG-AAAT-CTGATAAGG-AGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|31311375|gb|CD396578.1|CD396578
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|7926602|gb|AW832628.1|AW832628
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|193639463|gb|FK585704.1|FK585704
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|254328306|gb|GR835271.1|GR835271
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|6914973|gb|AW396503.1|AW396503
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208220505|gb|GE017683.1|GE017683
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTATAACATGAAGAAGCTGACTTANGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|193491938|gb|FK456518.1|FK456518
EST:     GATAAGCAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208119934|gb|GD916999.1|GD916999
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTGTGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|207728817|gb|GD708701.1|GD708701
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|7925127|gb|AW831153.1|AW831153
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|13312794|gb|BG406445.1|BG406445
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|193520187|gb|FK472438.1|FK472438
EST:     ATAAGGACG-CCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGG-AGGCTAAGTTGATTGC
genomic: ATAAGGA-GCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208282367|gb|GE076881.1|GE076881
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208150370|gb|GD950849.1|GD950849
EST:     TAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: TAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208051505|gb|GD846392.1|GD846392
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|14009081|gb|BG725685.1|BG725685
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|15202601|gb|BI425486.1|BI425486
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208200432|gb|GD996907.1|GD996907
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATAAAGGAAAAGGAAGGCTAAGTTG
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGA-GGAAA-GGAAGGCTAAGTTG
EST: gi|16996177|gb|BM085549.1|BM085549
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208206191|gb|GE004166.1|GE004166
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|209710635|gb|BW671007.1|BW671007
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208241036|gb|GE039586.1|GE039586
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|5820191|gb|AI988397.1|AI988397
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|193640136|gb|FK590939.1|FK590939
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|23733614|gb|BU765011.1|BU765011
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|31471703|gb|CD413731.1|CD413731
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|31475642|gb|CD417670.1|CD417670
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208061439|gb|GD860455.1|GD860455
EST:     TCCTACTCTCAGGAAATCTGATAAGGAG-CCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTANGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: TCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|193422541|gb|FK390168.1|FK390168
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|208267912|gb|GE070699.1|GE070699
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|207807802|gb|GD778487.1|GD778487
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
EST: gi|207772538|gb|GD743116.1|GD743116
EST:     GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAG                         GTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC
genomic: GATCCTACTCTCAGGAAATCTGATAAGGAGCCCCCGAAGGAGCACAAGAGgtaaagttga ... tcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gccttagtatttactgattggagaatgttcctgagaatatctggctcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGCACGCGTGGCGGCTATCAACTCTGCTGCTGATAGTGATGAAGATGATGAG
           tactgat  putative branch site (score: 2)
                                            ctcttttgt  putative PPT
     agtattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcatatatttttttttacttttagaacttttgtattggtaacatagccttagtatttactgattggagaatgttcctgagaatatctggctcttttgtagGTACAACATGAAGAAGCTGACTTATGAGGAAAGGAAGGCTAAGTTGATTGCACGCGTGGCGGCTATCAACTCTGCTGCTGATAGTGATGAAGATGATGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg