Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatgctctctctcttggttttaacttttgattttgttgatttttatcctggttttgtttaaactcaagacagaaattatttaatattttgtccatccaaactatcagcaacgtttgagtagtttgagtttcaataaagctaatggcttcaatatgacacctcatttcagGCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGGCATCTCTCTCAAAGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTA

Basic information

species Glycine max
transcript GLYMA13G33910.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G33910.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv02s0025g03150.t01 (Vitis vinifera), 3'ss of exon 7
----------------gtaaatgctctctctcttggttttaacttttgattttgttgatttttatcctggtt--ttgtttaa----actcaagacagaaattatttaatattttgtccatccaaactatcagcaacgtttgagtagtttgagtttcaataaagctaatggcttcaat--atgaca-cctcatttcagGCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGGCATCTCTCTCAAAGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTA
                 | ||   |   |   ||| |||  |  |||||||| ||| | |||  |  |  ||  ||||| |       | | || || | ||  | | | || ||| |        |||   |  |  |   | |   || | |  |||  |    ||   |  |    ||||   | |     |||| | | ||||| |||||||||||||||||||| || |||||||| ||||| || ||||||||||| || || ||| | ||||  |||||||||||| |||
gtaaatatgatctgtcctgaaccttggtttatttgctttagaaatttgatttggttcagtttccttttttttcattgttaatcaatgtttatgatagcagttgct-actcttatgtgccatttccttatattctgctgtgaggaaaaatgggatgaaatttattgtataaatctatccgatgatggctttgaaacagGTTGTTGACAAGCCTGCTCCTGTTAGAATATCATCCTTATTGACTTCTCGACACCTCTCTCAAAGGCGGATTAGGTTGCCTGCAAGGAAATATCATCCTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192295400|gb|FG987014.1|FG987014
EST:     GTCGAGTTGGAACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCT                         GCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGG
genomic: GTCGAGTTGGAACCACTCCTTCAATTCAATATGGAATCTCTAGCATGCCTgtaaatgctc ... ctcatttcagGCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtagtttgagtttcaataaagctaatggcttcaatatgacacctcatttcagGCTCTAGACAAACCTGCTCCTGTTAGAATATCCTCTTTATTGACATCTCGGCATCTCTCTCAAAGACGAATAAGGCTTCCTGTCAGGAAATATCATTCTA
                      agctaat  putative branch site (score: 3)
                                            cctcatttc  putative PPT
             tttcaataaa  TA-rich tract