1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attattttaatagtcaacaaatttattatatatgacattttgtgatttcatggtcatgcacaccttaattgtaatgtaaatattttttggttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCTCTCAGTCCTCCTCCTCCTCTAGAAACTTTGCCGGAAAAGGTTGCTAGGA
species | Glycine max |
transcript | GLYMA13G31260.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAG AAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCTEST: gi|298192115|gb|HO036197.1|HO036197
genomic: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttt ... ttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
EST: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAG AAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCTEST: gi|298168719|gb|HO009649.1|HO009649
genomic: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttt ... ttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
EST: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAG AAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
genomic: TTCATTTTCTCATGTTCTTGGATTGTGAAAGACGCAACTTTGTAGTTCAGgtaaatgttt ... ttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCT
tttcatggtcatgcacaccttaattgtaatgtaaatattttttggttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCTCTCAGTCCTCCTCCTCCTCTAGAAACTTTGCCGGAAAAGGTTGCTAGGA
ccttaat putative branch site (score: 4)
ttaattgtaatgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attattttaatagtcaacaaatttattatatatgacattttgtgatttcatggtcatgcacaccttaattgtaatgtaaatattttttggttgcatacagAAATACCATAGGGATATATTGGAGCGCCTGGTTGCTCCAGTGGCTATTGCTCTCAGTCCTCCTCCTCCTCTAGAAACTTTGCCGGAAAAGGTTGCTAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC