1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttgcatgttttttaacattgcaatggttgaaagactagtattcatgagctttactttggtatatatctttcataatttctaacacttaattattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTACATTTACTGATGTTACTTAGTTACTTAATAACCATCGCTACCCAATCTC
species | Glycine max |
transcript | GLYMA13G29400.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|254315528|gb|GR825337.1|GR825337
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|254342188|gb|GR853325.1|GR853325
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|11690379|gb|BF598055.1|BF598055
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTNTCTCACATAGAATGAAATAGTTAEST: gi|254317765|gb|GR826749.1|GR826749
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|18039284|gb|BM307578.1|BM307578
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|151402759|gb|EV272572.1|EV272572
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAGGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|193649690|gb|FK595371.1|FK595371
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: TGCCAAATCCTTCTTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTEST: gi|208291455|gb|GE096721.1|GE096721
genomic: TGCCAAATCCTTC-TGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTT
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTCCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|193718876|gb|FK649570.1|FK649570
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: TGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|208253800|gb|GE055554.1|GE055554
genomic: TGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|254317766|gb|GR826750.1|GR826750
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|193467983|gb|FK431752.1|FK431752
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: TGCCAAATCCTTCTTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTEST: gi|193702683|gb|FK638723.1|FK638723
genomic: TGCCAAATCCTTC-TGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTT
EST: TGCCAAATCCTTCTTGTCCTACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTEST: gi|193425337|gb|FK389940.1|FK389940
genomic: TGCCAAATCCTTC-TGACC-ACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTT
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|192294103|gb|FG986192.1|FG986192
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|208132249|gb|GD930280.1|GD930280
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|208112804|gb|GD908763.1|GD908763
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: TTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|208279955|gb|GE079621.1|GE079621
genomic: TTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: CCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|151393588|gb|EV263463.1|EV263463
genomic: CCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|193338173|gb|FK303856.1|FK303856
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|254342187|gb|GR853324.1|GR853324
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|207774164|gb|GD743286.1|GD743286
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: TGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTEST: gi|193629810|gb|FK574978.1|FK574978
genomic: TGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGT-GGAGGGGGTCTTTCTCACATAGAATGAAATAGTT
EST: TGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|51336638|gb|CO980504.1|CO980504
genomic: TGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|151412116|gb|EV281928.1|EV281928
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|12773661|gb|BG238588.1|BG238588
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|11275065|gb|BF325388.1|BF325388
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTAEST: gi|208271333|gb|GE067877.1|GE067877
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
EST: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAA GACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
genomic: GTTGTTGCCACTATTGTTTATGAGCTTATGCCAAATCCTTCTGACCACAAgtaagtattg ... tattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTA
gagctttactttggtatatatctttcataatttctaacacttaattattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTACATTTACTGATGTTACTTAGTTACTTAATAACCATCGCTACCCAATCTC
ttatttt CT-rich tract
tatatatctttcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcatgttttttaacattgcaatggttgaaagactagtattcatgagctttactttggtatatatctttcataatttctaacacttaattattttgtagGACACGTGCTGAAAGTGGAGGGGGTCTTTCTCACATAGAATGAAATAGTTACATTTACTGATGTTACTTAGTTACTTAATAACCATCGCTACCCAATCTC
- gcatgtt
- - - - - - - -cattgca
- - - - - - - - - - - - - - gaaagac
- - - - - - - - - - - - - - - - - - - - -tcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaacac