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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctctctatatcagtgaaacttttttatttctccaaaatgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcagATGGCATGGTCAAGAATAAAAATACGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGAGGTG

Basic information

species Glycine max
transcript GLYMA13G28760.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os11g43590.4 (Oryza sativa), 3'ss of exon 10
gtgagctctctatatcagtgaaacttttttatttctccaaaatgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcagATGGCATGGTCAAGAATAAAAATACGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGAGGTG
                 || |    | |    ||  |     || || ||   | ||  || || | |     | |  |||  ||  ||  | | |||||| |||||| ||| | ||||  | |||    |||||||||||  ||||||||||||| || | | | ||||||||||||||||||||  |||| ||||
-----------------gtaatttctatcgggtttcct----tgtaggttt--ttcttgttgat-gcgcttactgaaaaaaccattcttcttgttagATGGTATGGTCGAGAGTGAAAACCCATGGCCATCATCCATCACCTCGAGCTGGTTGCTGCGGAGCTCTCTGTGGCACTAAATGGTATATCGCAGGGGGTG

upper sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G070553_T01 (Zea mays), 3'ss of exon 10
gtgagctctctatatcagtgaaacttttttatttctccaaaatgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcagATGGCATGGTCAAGAATAAAAATACGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGAGGTG
                   | || | || |  |  | |   ||     ||   || | |   ||||  | |   | |  |  | | | | || | |||||| |||||||||  | ||||  | |||    |||||||||||  |||| |||||||| || | | | ||||| ||||||||||||||| |||||||||
-------------------gtaagtattgtcgtgttactttattggttttgcttgttaacagattgc-tgaaaaatttgatatctttatactattagATGGTATGGTCAAGGGTCAAAACCCATGGGCATCATCCATCACCTCGAGCAGGTTGCTGCGGAGCTCTTTGTGGAACTAAATGGTATATTGCAGGAGGTG

upper sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 8
lower sequence: AT5G18590.2 (Arabidopsis thaliana), 3'ss of exon 10
gtgagctctctatatcagtgaaac-ttttttatttctccaaaatgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcagATGGCATGGTCAAGAATAAAAATACGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGAGGTG
    |   |   |||   |  ||  |||||||||| |      |   ||   | ||  |||   || | |   ||  ||           || |  |||||| ||||||||||||||| ||| | || || || |||||||||||||| ||| | ||||| ||| | || || |||||||||||||| || ||||| |
----gtaatacttattgctataatgttttttatttatttggtttcttgac--attgaacatctcttatct--cttggtg-----------tcatcaagATGGTATGGTCAAGAATAAAGATAAGAGGATTTCACCCATCACCAAGAGCGGGTAGTTGTGGAGTTCTTTGCGGTACTAAATGGTATATAACCGGAGGAG

upper sequence: GLYMA13G28760.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv05s0020g01740.t01 (Vitis vinifera), 3'ss of exon 10
------------gtgagctctctata--tcagtg--aaacttttttatttctccaa-aatgaaga-ttaaatgctcattcattgtgtaatttaatgaaagtatattttctttcagATGGCATGGTCAAGAATAAAAATACGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGAGGTG
               |    |||  |  | | ||  ||||   |||||||||  ||  ||||| | ||| ||  |||||  |||   | ||| ||    | || |||| | |||||||  |||||||||||| || |      |      ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||  |||| ||||
gtttgtagagcaaccattcttctggagtttattgtcaaacaactttatttctataatgatgaaaacttacatcttcattagttg---attttgatatgtggat-ttttgtctcagATGATATGGTCAAGAATTAAGAAGAAACGAGGATTTCCATCACCTAGAGCTGGTTGTTGTGGAGTTTTATGTGGAACTAAATGGTATATAGCAGGGGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaagattaaatgctcattcattgtgtaatttaatgaaagtatattttctttcagATGGCATGGTCAAGAATAAAAATACGTGGTTTCCATCCATCACCAAGAGCTGGTTGCTGTGGTGTTTTATGTGGCACTAAATGGTATATTACAGGAGGTG
                            atttaat  putative branch site (score: 4)
                                          tattttctttc  putative PPT
                    attgtgtaatttaatg  TA-rich tract