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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgctaatctttttttccccttcaataaaaaattgttagtttatgatggccaaatgctatttgtttttttaagacactaataattgctgtgcttacagGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGT

Basic information

species Glycine max
transcript GLYMA13G26700.1
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 8
lower sequence: LOC_Os01g72340.1 (Oryza sativa), 3'ss of exon 9
gtactgctaatctttttttccccttcaataaaaaattgttagtttatgat------ggccaaatgctattt-------gtttttttaagacactaataattgctgtgctt---acagGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGT
|||   ||  ||| |       | |   | || |  | |    |||  ||      |||    |  | |||       | | |||| ||  | |||  |||  | |  ||   ||||||| |||| || ||||  |||||||| ||||||||||| || |||||||||||||||||||||||| | ||||||||||| |||||  | |||||  | |
gtagctctcttctgtcaactgtcatatctgaagacatttcgtattactatctctttggctcgtttttttttctcccaggctgttttcaggtattaactatttatttatttgtgacagGATCTGGTTTTGATGAGACAAAACAACATTAATGCTGTTAGAAACAGCCATTATCCCCAACATCCAAGGTGGTATGAGCTGTGTGACATTTTTGGACTTT

upper sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 8
lower sequence: GRMZM2G032496_T01 (Zea mays), 3'ss of exon 1
-----------------gtactgctaatctttttttccccttca-ataa-aaaattgttagtttatgatggccaaatgct---atttgtttttttaagacactaataattgctgtgcttacagGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGT
                  || ||   | | ||||      || | |||| ||  |  || || |    |   || ||||     ||    || |||  | |    || |||      | ||||||  || | || |||| |||||||||||| |||||||| || || |||||||| || || || ||| | ||||||||| |||||||  | |||||  | |
gtcaagatcttcctgtcatattggagaacattttaagtttttaacataataatctctttggtctgatttaatcatatgcccaggttcagattcttacaatatatctatttg------tgacagGACCTGATTTTGATGAGGCAAAACAATATCAATGCTGTTAGAAATAGCCATTACCCACAGCACCCAAGGTGGTATGAGTTATGTGACATTTTTGGTCTTT

upper sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 8
lower sequence: AT3G54440.3 (Arabidopsis thaliana), 3'ss of exon 8
--------------------gtactgctaatctttttttccccttcaataaaaaattgttagtttatgatggccaaatgctatttgtttttttaagacactaat--aattgctgtgct----tacagGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGT
                     |  ||   | || |  || | |      |     |  ||||   |  |      ||   | | |  | | ||  ||   | ||  |     ||| ||      ||||||||  |  | |||||  || | ||||| ||||| ||| | ||||| |||||||| |||||||| || ||||||||  ||||||||||||| |||||||
gtaacatgttttttttttttctcttgtccagctctactttctcccttccatggtttacttaggacaccactatttaac-ttgtgtactctattgggattttgatttaccccttgtactgttcctcagGATTTAATTATGATGAAAGAATATAATATCAATGCGGTGCGAAACAGTCATTATCCTCAACATCCCCGCTGGTATGAATTATGTGATTTGTTCGGCATGT

upper sequence: GLYMA13G26700.1 (Glycine max), 3'ss of exon 8
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 3'ss of exon 8
gtactgc-taatcttttt-ttccccttcaataaaaaatt-----gtta-gtttatgatggccaaatgctatttgtttttttaagacactaataattgctgtgcttacagGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGT
|| |  | |  |||| || ||| | ||  |||  |  ||     |||| ||| ||| |||    ||  |  |  | || |  |||   | || | |     || |||||||||||||  ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||| | |||||||||||||||||||
gtgcaacctcctcttgttgttctctttggatatcatctttgtgtgttaagttaatgttggtttgat--tgatcatattgtcgagatcttcattactctctggcatacagGATTTGGTTCTAATGAAGCAAAACAATATCAATGCTGTGAGAAACAGCCATTATCCCCAACATCCTCGATGGTACGAGTTGTGTGATTTGTTTGGCATGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatggccaaatgctatttgtttttttaagacactaataattgctgtgcttacagGATTTGGTCTTAATGAAGCAAAACAATATTAATGCTGTGAGGAACAGCCATTATCCCCAACATCCACGTTGGTATGAGCTATGTGATTTGTTTGGCATGT
                               cactaat  putative branch site (score: 2)
              tatttgtttttttaag  TA-rich tract