1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttatttcaagctagaatatgattgtgctgtcattttaatttagataatttcctcaaattctatctcaagacttattggcttgcgcttggcaaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGAGATGGGTTCTTTAGTTGCTTGCCTGACTTTTATTCATGGCATGCGTCAA
species | Glycine max |
transcript | GLYMA13G25690.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAG GAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGAEST: gi|4260402|gb|AI416898.1|AI416898
genomic: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGgtaattcgag ... aaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA
EST: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAG GAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGAEST: gi|120531028|gb|EH259161.1|EH259161
genomic: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGgtaattcgag ... aaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA
EST: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAG GAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA
genomic: GAATCTGGTGGAGTGATGGATTATGAAGAAGATCGAAGCCGACCAAAGAGgtaattcgag ... aaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGA
aatttcctcaaattctatctcaagacttattggcttgcgcttggcaaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGAGATGGGTTCTTTAGTTGCTTGCCTGACTTTTATTCATGGCATGCGTCAA
aaattctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatttcaagctagaatatgattgtgctgtcattttaatttagataatttcctcaaattctatctcaagacttattggcttgcgcttggcaaatttgcagGAGGCGGCATCCAATTTCTTGAAGATTTAGTAGATAAGGGAGCTCATTGGAGATGGGTTCTTTAGTTGCTTGCCTGACTTTTATTCATGGCATGCGTCAA
- - ttcaagc
- - - - - - - - - - - - tgctgtc
- - - - - - - - - - - - - - - - - - - - - - - - - cctcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgcg